Strain identifier
BacDive ID: 133493
Type strain: 
Species: Pelagerythrobacter marinus
Strain Designation: H32
NCBI tax ID(s): 538382 (species)
version 8.1 (current version)
General
@ref: 29187
BacDive-ID: 133493
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative, rod-shaped
description: Pelagerythrobacter marinus H32 is a Gram-negative, rod-shaped bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 538382
- Matching level: species
doi: 10.13145/bacdive133493.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Erythrobacteraceae
- genus: Pelagerythrobacter
- species: Pelagerythrobacter marinus
- full scientific name: Pelagerythrobacter marinus (Lai et al. 2009) Xu et al. 2020
synonyms
- @ref: 20215
- synonym: Altererythrobacter marinus
@ref: 29187
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Erythrobacteraceae
genus: Altererythrobacter
species: Altererythrobacter marinus
strain designation: H32
type strain: yes
Morphology
cell morphology
- @ref: 29187
- gram stain: negative
- cell length: 1.1 µm
- cell width: 0.4 µm
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29187 | positive | growth | 10-42 | |
| 29187 | positive | optimum | 25-37 | mesophilic |
Physiology and metabolism
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29187 | NaCl | positive | growth | 0.5-5.0 % |
| 29187 | NaCl | positive | optimum | 3 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29187 | 37054 | 3-hydroxybutyrate | + | carbon source |
| 29187 | 30089 | acetate | + | carbon source |
| 29187 | 40585 | alpha-cyclodextrin | + | carbon source |
| 29187 | 28644 | 2-oxopentanoate | + | carbon source |
| 29187 | 22653 | asparagine | + | carbon source |
| 29187 | 35391 | aspartate | + | carbon source |
| 29187 | 29987 | glutamate | + | carbon source |
| 29187 | 25017 | leucine | + | carbon source |
| 29187 | 17306 | maltose | + | carbon source |
| 29187 | 51850 | methyl pyruvate | + | carbon source |
| 29187 | 18257 | ornithine | + | carbon source |
| 29187 | 28044 | phenylalanine | + | carbon source |
| 29187 | 26271 | proline | + | carbon source |
| 29187 | 15361 | pyruvate | + | carbon source |
| 29187 | 17822 | serine | + | carbon source |
| 29187 | 26986 | threonine | + | carbon source |
| 29187 | 53423 | tween 40 | + | carbon source |
| 29187 | 53426 | tween 80 | + | carbon source |
| 29187 | 4853 | esculin | + | hydrolysis |
| 29187 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 29187
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29187 | acid phosphatase | + | 3.1.3.2 |
| 29187 | alkaline phosphatase | + | 3.1.3.1 |
| 29187 | catalase | + | 1.11.1.6 |
Isolation, sampling and environmental information
isolation
- @ref: 29187
- sample type: seawater
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Sequence information
16S sequences
- @ref: 29187
- description: Alterierythrobacter sp. H32 16S ribosomal RNA gene, partial sequence
- accession: EU726272
- length: 1451
- database: nuccore
- NCBI tax ID: 538382
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pelagerythrobacter marinus H32 | GCA_009827515 | contig | ncbi | 538382 |
| 66792 | Pelagerythrobacter marinus H32 | 2915110188 | draft | img | 538382 |
GC content
- @ref: 29187
- GC-content: 66.5
External links
@ref: 29187
culture collection no.: CCTCC AB 208229, LMG 24629, MCCC 1A01070
straininfo link
- @ref: 91467
- straininfo: 351946
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29187 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25611 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 91467 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID351946.1 |