Strain identifier

BacDive ID: 133489

Type strain: Yes

Species: Flavobacterium chungangense

Strain Designation: CJ7

Strain history: CIP <- 2009, JCM <- 2008, C.-J. Cha, Chung-Ang Univ., Anseong, Korea: strain CJ7

NCBI tax ID(s): 1453505 (strain), 554283 (species)

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General

@ref: 29175

BacDive-ID: 133489

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Flavobacterium chungangense CJ7 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Fresh water lake.

NCBI tax id

NCBI tax idMatching level
1453505strain
554283species

strain history

@refhistory
67770C.-J. Cha CJ7.
118263CIP <- 2009, JCM <- 2008, C.-J. Cha, Chung-Ang Univ., Anseong, Korea: strain CJ7

doi: 10.13145/bacdive133489.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium chungangense
  • full scientific name: Flavobacterium chungangense Kim et al. 2009

@ref: 29175

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium chungangense

strain designation: CJ7

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapeconfidencemotility
29175negative2.7 µm0.65 µmrod-shaped
69480negative99.998
118263negativerod-shapedno

pigmentation

  • @ref: 29175
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37885MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromatiyesDistilled water make up to (1000.000 ml);R2A agar (18.200 g)
118263CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566

culture temp

@refgrowthtypetemperaturerange
29175positivegrowth05-35
29175positiveoptimum25mesophilic
37885positivegrowth25mesophilic
61775positivegrowth30mesophilic
67770positivegrowth25mesophilic

culture pH

@refabilitytypepH
29175positivegrowth05-08
29175positiveoptimum6

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29175aerobe
61775aerobe
118263obligate aerobe

spore formation

@refspore formationconfidence
29175no
69481no100
69480no99.998

halophily

  • @ref: 29175
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-4 %

observation

@refobservation
29175aggregates in clumps
67770quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2917516947citrate+carbon source
2917529987glutamate+carbon source
2917515361pyruvate+carbon source
2917517992sucrose+carbon source
291754853esculin+hydrolysis
11826317632nitrate+reduction
11826316301nitrite-reduction

metabolite production

  • @ref: 118263
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
29175acid phosphatase+3.1.3.2
29175alkaline phosphatase+3.1.3.1
29175catalase+1.11.1.6
29175gelatinase+
29175cytochrome oxidase+1.9.3.1
118263oxidase+
118263catalase+1.11.1.6
118263urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    61775C15:012.615
    61775C16:01.916
    61775C15:0 ANTEISO1.514.711
    61775C15:0 ISO33.214.621
    61775C15:0 ISO 3OH8.916.135
    61775C15:1 ISO G4.314.441
    61775C15:1 ω6c8.514.856
    61775C16:1 ω7c3.515.819
    61775C17:0 iso 3OH7.818.161
    61775C17:1 ISO I/C16:0 DMA2.216.481
    61775C17:1 ω6c5.916.862
    61775C17:1 ω8c1.116.792
    61775C17:1 ω9c ISO4.516.416
    61775unknown 11.5411.611.541
    61775unknown 13.5662.713.566
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118263-+++-++---++-+-++---

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
61775Fresh water lake2008AnseongRepublic of KoreaKORAsia
67770Freshwater lake at Chung-Ang Univ.AnseongRepublic of KoreaKORAsia
118263Environment, Feshwater, lakeAnseongRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Lake (large)

Safety information

risk assessment

  • @ref: 118263
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 29175
  • description: Flavobacterium chungangense strain CJ7 16S ribosomal RNA gene, partial sequence
  • accession: EU924275
  • length: 1451
  • database: nuccore
  • NCBI tax ID: 554283

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium chungangense CIP 110025GCA_903819445scaffoldncbi554283
66792Flavobacterium chungangense LMG 267291453505.4wgspatric1453505
66792Flavobacterium chungangense strain CIP110025554283.6wgspatric554283
66792Flavobacterium sp. T13(2019) strain CIP1114112654844.3wgspatric2654844
66792Flavobacterium chungangense LMG 267292609460032draftimg1453505
67770Flavobacterium chungangense LMG 26729GCA_000735715contigncbi1453505

GC content

@refGC-contentmethod
2917534.5
6777034.5high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno87.59no
gram-positiveno98.213no
anaerobicno99.739no
halophileno97.188no
spore-formingno92.66no
thermophileno99.695yes
glucose-utilyes91.394no
aerobicyes90.699no
flagellatedno94.513no
glucose-fermentno87.835no

External links

@ref: 29175

culture collection no.: KACC 13353, JCM 15651, CCUG 58910, CIP 110025, LMG 26729

straininfo link

  • @ref: 91465
  • straininfo: 363404

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19542120Flavobacterium chungangense sp. nov., isolated from a freshwater lake.Kim JH, Kim KY, Cha CJInt J Syst Evol Microbiol10.1099/ijs.0.007955-02009Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, Fatty Acids/analysis, Flavobacterium/*classification/genetics/isolation & purification/physiology, Fresh Water/*microbiology, Genes, rRNA, Genotype, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Vitamin K 2/analysisGenetics
Phylogeny28671526Flavobacterium keumense sp. nov., isolated from freshwater.Ekwe AP, Ahn JH, Kim SBInt J Syst Evol Microbiol10.1099/ijsem.0.0019202017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Fresh Water/*microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Spermidine/chemistry, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29175Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172559928776041
37885Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7837
61775Curators of the CCUGhttps://www.ccug.se/strain?id=58910Culture Collection University of Gothenburg (CCUG) (CCUG 58910)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91465Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID363404.1
118263Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110025Collection of Institut Pasteur (CIP 110025)