Strain identifier

BacDive ID: 133455

Type strain: Yes

Species: Adhaeribacter terreus

Strain Designation: DNG6

NCBI tax ID(s): 529703 (species)

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General

@ref: 29044

BacDive-ID: 133455

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Adhaeribacter terreus DNG6 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 529703
  • Matching level: species

doi: 10.13145/bacdive133455.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Hymenobacteraceae
  • genus: Adhaeribacter
  • species: Adhaeribacter terreus
  • full scientific name: Adhaeribacter terreus Zhang et al. 2009

@ref: 29044

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Hymenobacteraceae

genus: Adhaeribacter

species: Adhaeribacter terreus

strain designation: DNG6

type strain: yes

Morphology

cell morphology

  • @ref: 29044
  • gram stain: negative
  • cell length: 1.5 µm
  • cell width: 0.4 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 29044
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29044positivegrowth16-33
29044positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
29044positivegrowth6.0-9.0alkaliphile
29044positiveoptimum7.25

Physiology and metabolism

oxygen tolerance

  • @ref: 29044
  • oxygen tolerance: aerobe

halophily

  • @ref: 29044
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2904422599arabinose+carbon source
2904429016arginine+carbon source
2904429987glutamate+carbon source
2904415428glycine+carbon source
2904428044phenylalanine+carbon source
2904426271proline+carbon source
2904427082trehalose+carbon source
290444853esculin+hydrolysis

enzymes

@refvalueactivityec
29044acid phosphatase+3.1.3.2
29044alkaline phosphatase+3.1.3.1
29044alpha-galactosidase+3.2.1.22
29044cytochrome oxidase+1.9.3.1
29044urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 29044
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

  • @ref: 29044
  • description: Adhaeribacter terreus strain DNG6 16S ribosomal RNA gene, partial sequence
  • accession: EU682684
  • length: 1513
  • database: nuccore
  • NCBI tax ID: 529703

GC content

  • @ref: 29044
  • GC-content: 48.1

External links

@ref: 29044

culture collection no.: CGMCC 1.6961, NBRC 104235

literature

  • topic: Phylogeny
  • Pubmed-ID: 19542137
  • title: Adhaeribacter terreus sp. nov., isolated from forest soil.
  • authors: Zhang JY, Liu XY, Liu SJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.004796-0
  • year: 2009
  • mesh: Bacterial Typing Techniques, Base Composition, China, Cytophagaceae/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, *Trees
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29044Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172547428776041