Strain identifier
BacDive ID: 133450
Type strain: 
Species: Leptobacterium flavescens
Strain Designation: MBIC06275 5, YM3-301
NCBI tax ID(s): 472055 (species)
version 8.1 (current version)
General
@ref: 29029
BacDive-ID: 133450
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Leptobacterium flavescens MBIC06275 5 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 472055
- Matching level: species
doi: 10.13145/bacdive133450.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Leptobacterium
- species: Leptobacterium flavescens
- full scientific name: Leptobacterium flavescens Mitra et al. 2009
@ref: 29029
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Leptobacterium
species: Leptobacterium flavescens
strain designation: MBIC06275 5, YM3-301
type strain: yes
Morphology
cell morphology
- @ref: 29029
- gram stain: negative
- cell length: 8.75 µm
- cell width: 0.55 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 29029
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29029 | positive | growth | 17-30 | |
| 29029 | positive | optimum | 27.5 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29029 | positive | growth | 06-09 | alkaliphile |
| 29029 | positive | optimum | 6.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 29029
- oxygen tolerance: aerobe
spore formation
- @ref: 29029
- spore formation: no
halophily
- @ref: 29029
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <4 %
observation
- @ref: 29029
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29029 | 58143 | 5-dehydro-D-gluconate | + | carbon source |
| 29029 | 22599 | arabinose | + | carbon source |
| 29029 | 17306 | maltose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29029 | acid phosphatase | + | 3.1.3.2 |
| 29029 | alkaline phosphatase | + | 3.1.3.1 |
| 29029 | catalase | + | 1.11.1.6 |
| 29029 | gelatinase | + | |
| 29029 | cytochrome oxidase | + | 1.9.3.1 |
| 29029 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 29029
- sample type: seawater
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_101588.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_230;96_41156;97_52526;98_69350;99_101588&stattab=map
- Last taxonomy: Leptobacterium flavescens subclade
- 16S sequence: AB362212
- Sequence Identity:
- Total samples: 1314
- soil counts: 49
- aquatic counts: 1143
- animal counts: 120
- plant counts: 2
Sequence information
16S sequences
- @ref: 29029
- description: Leptobacterium flavescens gene for 16S rRNA, partial sequence, strain: YM3-0301
- accession: AB362212
- length: 1437
- database: nuccore
- NCBI tax ID: 472055
GC content
- @ref: 29029
- GC-content: 42
External links
@ref: 29029
culture collection no.: KCTC 221605, NBRC 104141
literature
- topic: Phylogeny
- Pubmed-ID: 19196755
- title: Leptobacterium flavescens gen. nov., sp. nov., a marine member of the family Flavobacteriaceae, isolated from marine sponge and seawater.
- authors: Mitra S, Matsuo Y, Haga T, Yasumoto-Hirose M, Yoon J, Kasai H, Yokota A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.004358-0
- year: 2009
- mesh: Animals, Fatty Acids/analysis, Flavobacteriaceae/chemistry/*classification/genetics/isolation & purification, Marine Biology, Molecular Sequence Data, Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Species Specificity
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29029 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25459 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |