Strain identifier
BacDive ID: 133443
Type strain: 
Species: Marispirillum indicum
Strain Designation: B142
NCBI tax ID(s): 523786 (species)
version 8.1 (current version)
General
@ref: 29014
BacDive-ID: 133443
keywords: 16S sequence, Bacteria, Gram-negative, motile, spiral-shaped
description: Marispirillum indicum B142 is a Gram-negative, motile, spiral-shaped bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 523786
- Matching level: species
doi: 10.13145/bacdive133443.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Rhodospirillaceae
- genus: Marispirillum
- species: Marispirillum indicum
- full scientific name: Marispirillum indicum Lai et al. 2009
@ref: 29014
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Rhodospirillaceae
genus: Marispirillum
species: Marispirillum indicum
strain designation: B142
type strain: yes
Morphology
cell morphology
- @ref: 29014
- gram stain: negative
- cell length: 2.3 µm
- cell width: 0.65 µm
- cell shape: spiral-shaped
- motility: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29014 | positive | growth | 10-41 | |
| 29014 | positive | optimum | 31 | mesophilic |
Physiology and metabolism
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29014 | NaCl | positive | growth | 0.5-12 % |
| 29014 | NaCl | positive | optimum | 5 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29014 | 21217 | L-alaninamide | + | carbon source |
| 29014 | 16449 | alanine | + | carbon source |
| 29014 | 29016 | arginine | + | carbon source |
| 29014 | 24148 | galactonate | + | carbon source |
| 29014 | 24265 | gluconate | + | carbon source |
| 29014 | 29987 | glutamate | + | carbon source |
| 29014 | 28087 | glycogen | + | carbon source |
| 29014 | 24996 | lactate | + | carbon source |
| 29014 | 28044 | phenylalanine | + | carbon source |
| 29014 | 26271 | proline | + | carbon source |
| 29014 | 17272 | propionate | + | carbon source |
| 29014 | 15361 | pyruvate | + | carbon source |
| 29014 | 30031 | succinate | + | carbon source |
| 29014 | 26986 | threonine | + | carbon source |
| 29014 | 53423 | tween 40 | + | carbon source |
| 29014 | 53426 | tween 80 | + | carbon source |
| 29014 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 29014
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 29014
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29014 | alkaline phosphatase | + | 3.1.3.1 |
| 29014 | gelatinase | + | |
| 29014 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 29014
- sample type: seawater
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_102515.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_292;96_41448;97_52930;98_69924;99_102515&stattab=map
- Last taxonomy: Marispirillum indicum subclade
- 16S sequence: EU642410
- Sequence Identity:
- Total samples: 631
- soil counts: 206
- aquatic counts: 406
- animal counts: 16
- plant counts: 3
Sequence information
16S sequences
- @ref: 29014
- description: Marispirillum indicum strain B142 16S ribosomal RNA gene, partial sequence
- accession: EU642410
- length: 1450
- database: nuccore
- NCBI tax ID: 523786
GC content
- @ref: 29014
- GC-content: 67.3
External links
@ref: 29014
culture collection no.: CCTCC AB 208225, LMG 24627, MCCC 1A01235
straininfo link
- @ref: 91445
- straininfo: 351953
literature
- topic: Phylogeny
- Pubmed-ID: 19502301
- title: Marispirillum indicum gen. nov., sp. nov., isolated from a deep-sea environment.
- authors: Lai Q, Yuan J, Gu L, Shao Z
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.003889-0
- year: 2009
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genotype, Geologic Sediments/*microbiology, Indian Ocean, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodospirillaceae/*classification/genetics/isolation & purification/physiology, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29014 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25445 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91445 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID351953.1 |