Strain identifier

BacDive ID: 133433

Type strain: Yes

Species: Gemella asaccharolytica

NCBI tax ID(s): 502393 (species)

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General

@ref: 28933

BacDive-ID: 133433

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-variable, coccus-shaped

description: Gemella asaccharolytica ATCC BAA 1630 is an anaerobe, mesophilic, Gram-variable bacterium that was isolated from Human wounds.

NCBI tax id

  • NCBI tax id: 502393
  • Matching level: species

doi: 10.13145/bacdive133433.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Gemellaceae
  • genus: Gemella
  • species: Gemella asaccharolytica
  • full scientific name: Gemella asaccharolytica Ulger-Toprak et al. 2010

  • synonyms

    • @ref: 20215
    • synonym: Gemelliphila asaccharolytica

@ref: 28933

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Caryophanales, not assigned to family

genus: Gemella

species: Gemella asaccharolytica

type strain: yes

Morphology

cell morphology

  • @ref: 28933
  • gram stain: variable
  • cell width: 0.5 µm
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 61172
  • incubation period: 3 days

pigmentation

  • @ref: 28933
  • production: no

Culture and growth conditions

culture temp

  • @ref: 61172
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
28933anaerobe
61172anaerobe

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
28933Human wounds
61172Human abscess,finger2007-07-27CA,Los AngelesUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Other#Wound

taxonmaps

  • @ref: 69479
  • File name: preview.99_8209.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_238;96_3776;97_4652;98_5973;99_8209&stattab=map
  • Last taxonomy: Gemella asaccharolytica subclade
  • 16S sequence: EU427463
  • Sequence Identity:
  • Total samples: 18219
  • soil counts: 427
  • aquatic counts: 317
  • animal counts: 17388
  • plant counts: 87

Sequence information

16S sequences

  • @ref: 28933
  • description: Gemella asaccharolytica strain WAL 1945J 16S ribosomal RNA gene, partial sequence
  • accession: EU427463
  • length: 1403
  • database: nuccore
  • NCBI tax ID: 502393

External links

@ref: 28933

culture collection no.: ATCC BAA 1630, CCUG 57045, WAL 1945J

straininfo link

  • @ref: 91438
  • straininfo: 411718

literature

  • topic: Phylogeny
  • Pubmed-ID: 19666813
  • title: Gemella asaccharolytica sp. nov., isolated from human clinical specimens.
  • authors: Ulger-Toprak N, Summanen PH, Liu C, Rowlinson MC, Finegold SM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.001966-0
  • year: 2009
  • mesh: Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Gram-Positive Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Staphylococcaceae/*classification/genetics/*isolation & purification/physiology, Wound Infection/*microbiology
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
28933Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172537228776041
61172Curators of the CCUGhttps://www.ccug.se/strain?id=57045Culture Collection University of Gothenburg (CCUG) (CCUG 57045)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91438Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID411718.1