Strain identifier
BacDive ID: 13343
Type strain: 
Species: Pseudonocardia autotrophica
Strain Designation: W 1961
Strain history: <- R.E. Gordon, IMRU <- L.K. Georg, W 1961 (Nocardia coeliaca) <- L.E. Vazquez
NCBI tax ID(s): 2074 (species)
General
@ref: 10765
BacDive-ID: 13343
DSM-Number: 43102
keywords: 16S sequence, Bacteria, mesophilic, human pathogen
description: Pseudonocardia autotrophica W 1961 is a mesophilic human pathogen of the family Pseudonocardiaceae.
NCBI tax id
- NCBI tax id: 2074
- Matching level: species
strain history
- @ref: 10765
- history: <- R.E. Gordon, IMRU <- L.K. Georg, W 1961 (Nocardia coeliaca) <- L.E. Vazquez
doi: 10.13145/bacdive13343.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Pseudonocardia
- species: Pseudonocardia autotrophica
- full scientific name: Pseudonocardia autotrophica (Takamiya and Tubaki 1956) Warwick et al. 1994
synonyms
@ref synonym 20215 Proactinomyces autotrophicus 20215 Streptomyces autotrophicus 20215 Nocardia autotrophica 20215 Amycolata autotrophica
@ref: 10765
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Pseudonocardia
species: Pseudonocardia autotrophica
full scientific name: Pseudonocardia autotrophica (Takamiya and Tubaki 1956) Warwick et al. 1994 emend. Nouioui et al. 2018
strain designation: W 1961
type strain: no
Culture and growth conditions
culture medium
- @ref: 10765
- name: GYM+S MEDIUM (DSMZ Medium 214)
- growth: yes
- link: https://mediadive.dsmz.de/medium/214
- composition: Name: GYM+S MEDIUM (DSMZ Medium 214) Composition: Starch 20.0 g/l Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 10765
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_4509.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_611;97_2732;98_3390;99_4509&stattab=map
- Last taxonomy: Dietzia
- 16S sequence: X79291
- Sequence Identity:
- Total samples: 11008
- soil counts: 1292
- aquatic counts: 2957
- animal counts: 6479
- plant counts: 280
Safety information
risk assessment
- @ref: 10765
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: D.maris (DSM 43102) 16S rRNA gene
- accession: X79291
- length: 1473
- database: ena
- NCBI tax ID: 37915
External links
@ref: 10765
culture collection no.: DSM 43102, IMRU 1576
straininfo link
- @ref: 82543
- straininfo: 50163
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10765 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43102) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43102 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 82543 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50163.1 | StrainInfo: A central database for resolving microbial strain identifiers |