Strain identifier

BacDive ID: 133422

Type strain: Yes

Species: Thalassomonas haliotis

Strain Designation: A5K-61

NCBI tax ID(s): 485448 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 28887

BacDive-ID: 133422

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Thalassomonas haliotis A5K-61 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from marine animals.

NCBI tax id

  • NCBI tax id: 485448
  • Matching level: species

doi: 10.13145/bacdive133422.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Colwelliaceae
  • genus: Thalassomonas
  • species: Thalassomonas haliotis
  • full scientific name: Thalassomonas haliotis Hosoya et al. 2009

@ref: 28887

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Colwelliaceae

genus: Thalassomonas

species: Thalassomonas haliotis

strain designation: A5K-61

type strain: yes

Morphology

cell morphology

  • @ref: 28887
  • gram stain: negative
  • cell length: 1.5 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 28887
  • production: yes

Culture and growth conditions

culture temp

  • @ref: 28887
  • growth: positive
  • type: optimum
  • temperature: 27.5
  • range: mesophilic

culture pH

@refabilitytypepHPH range
28887positivegrowth6.5-8.5alkaliphile
28887positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 28887
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
28887168082-dehydro-D-gluconate+carbon source
28887581435-dehydro-D-gluconate+carbon source
2888717057cellobiose+carbon source
2888717234glucose+carbon source
2888717754glycerol+carbon source
2888728087glycogen+carbon source
2888717306maltose+carbon source
2888728053melibiose+carbon source
28887506227N-acetylglucosamine+carbon source
2888733942ribose+carbon source
2888717992sucrose+carbon source
2888727082trehalose+carbon source
2888753424tween 20+carbon source
2888753423tween 40+carbon source
2888753425tween 60+carbon source
2888753426tween 80+carbon source
2888717151xylitol+carbon source
288874853esculin+hydrolysis
2888717632nitrate+reduction

enzymes

@refvalueactivityec
28887acid phosphatase+3.1.3.2
28887alkaline phosphatase+3.1.3.1
28887catalase+1.11.1.6
28887gelatinase+
28887cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 28887
  • sample type: marine animals

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host

Sequence information

16S sequences

  • @ref: 28887
  • description: Thalassomonas haliotis gene for 16S ribosomal RNA, partial sequence
  • accession: AB369381
  • length: 1465
  • database: nuccore
  • NCBI tax ID: 485448

GC content

  • @ref: 28887
  • GC-content: 50

External links

@ref: 28887

culture collection no.: MBIC 08329, NCIMB 14417, NBRC 104232

literature

  • topic: Phylogeny
  • Pubmed-ID: 19329588
  • title: Thalassomonas actiniarum sp. nov. and Thalassomonas haliotis sp. nov., isolated from marine animals.
  • authors: Hosoya S, Adachi K, Kasai H
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000539-0
  • year: 2009
  • mesh: Animals, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Gammaproteobacteria/chemistry/*classification/genetics/*isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
28887Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172532728776041