Strain identifier

BacDive ID: 133391

Type strain: Yes

Species: Terrimonas crocea

Strain Designation: M1-33108

Strain history: <- Myong Chol Kim, Fang Peng, Wuhan Univ.

NCBI tax ID(s): 1867851 (species)

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General

@ref: 25277

BacDive-ID: 133391

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming, pigmented

description: Terrimonas crocea M1-33108 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and has a yellow pigmentation.

NCBI tax id

  • NCBI tax id: 1867851
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Myong Chol Kim, Fang Peng, Wuhan Univ.

doi: 10.13145/bacdive133391.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Chitinophagia
  • order: Chitinophagales
  • family: Chitinophagaceae
  • genus: Terrimonas
  • species: Terrimonas crocea
  • full scientific name: Terrimonas crocea Kim et al. 2017

@ref: 25277

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Chitinophagales

family: Chitinophagaceae

genus: Terrimonas

species: Terrimonas crocea

strain designation: M1-33108

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
25277negative1.3-1.7 µm0.4-0.6 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 25277
  • colony size: 1 mm
  • colony color: yellow
  • colony shape: circular
  • medium used: R2A agar

pigmentation

  • @ref: 25277
  • production: yes
  • color: yellow
  • name: Flexirubin-type

Culture and growth conditions

culture medium

@refnamegrowth
25277Reasoner's 2A agar (R2A)yes
25277TSB agaryes
25277NB agaryes
25277MB agarno
25277PDAno
25277MacConkey agarno

culture temp

@refgrowthtypetemperaturerange
25277positivegrowth4-30
25277positiveoptimum28mesophilic
25277nogrowth37mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepH
25277positivegrowth6.0-8.0
25277positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
25277aerobe
67771aerobe

spore formation

@refspore formation
25277no
67771no

halophily

  • @ref: 25277
  • salt: NaCl
  • tested relation: maximum
  • concentration: 0.5 %(w/v)

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2527717128adipate-assimilation
2527722599arabinose-assimilation
2527785146carboxymethylcellulose-hydrolysis
25277casein-hydrolysis
2527717029chitin-hydrolysis
2527716947citrate-assimilation
2527716991dna-hydrolysis
252775291gelatin-hydrolysis
2527717234glucose-builds acid from
2527717234glucose-assimilation
2527725115malate-assimilation
2527717306maltose-assimilation
2527737684mannose-assimilation
25277506227N-acetylglucosamine-assimilation
2527717632nitrate-reduction
2527718401phenylacetate-assimilation
2527728017starch-hydrolysis
2527753424tween 20-hydrolysis
2527753423tween 40-hydrolysis
2527753425tween 60-hydrolysis
2527753426tween 80-hydrolysis
2527737166xylan-hydrolysis
252773-O-methyl alpha-D-glucopyranoside+builds acid from
2527717925alpha-D-glucose+oxidation
2527727613amygdalin+builds acid from
2527717057cellobiose+builds acid from
2527717108D-arabinose+builds acid from
2527715824D-fructose+builds acid from
2527715824D-fructose+oxidation
2527712936D-galactose+builds acid from
2527712936D-galactose+oxidation
2527762318D-lyxose+builds acid from
2527716523D-serine+oxidation
2527716443D-tagatose+builds acid from
2527765327D-xylose+builds acid from
2527723652dextrin+oxidation
252774853esculin+hydrolysis
252774853esculin+builds acid from
2527728066gentiobiose+builds acid from
2527730849L-arabinose+builds acid from
2527718287L-fucose+builds acid from
2527729985L-glutamate+oxidation
2527716857L-threonine+oxidation
2527717716lactose+builds acid from
2527717306maltose+builds acid from
2527717306maltose+oxidation
252776731melezitose+builds acid from
2527728053melibiose+builds acid from
2527743943methyl alpha-D-mannoside+builds acid from
25277506227N-acetylglucosamine+builds acid from
25277potassium 5-dehydro-D-gluconate+builds acid from
2527716634raffinose+builds acid from
2527717814salicin+builds acid from
2527717992sucrose+builds acid from
2527727082trehalose+builds acid from
2527732528turanose+builds acid from

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
2527728001vancomycinyesyes30 µg (disc)
25277100241ciprofloxacinyesyes5 µg (disc)
2527727902tetracyclineyesyes30 µg (disc)
2527728971ampicillinyesyes10 µg (disc)
2527717076streptomycinyesyes10 µg (disc)
2527717698chloramphenicolyesyes30 µg (disc)
252772637amikacinyesyes30 µg (disc)
252778309polymyxin byesyes300 Unit (disc)
2527717833gentamicinyesyes30 µg (disc)
252776104kanamycinyesyes30 µg (disc)
2527718208penicillin gyesyes10 Unit (disc)

metabolite production

  • @ref: 25277
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
25277acid phosphatase+3.1.3.2
25277alkaline phosphatase+3.1.3.1
25277alpha-chymotrypsin-3.4.21.1
25277alpha-galactosidase+3.2.1.22
25277alpha-glucosidase+3.2.1.20
25277alpha-mannosidase+3.2.1.24
25277arginine dihydrolase-3.5.3.6
25277beta-fucosidase-
25277beta-galactosidase+3.2.1.23
25277beta-glucosidase+3.2.1.21
25277beta-glucuronidase-3.2.1.31
25277catalase+1.11.1.6
25277cystine arylamidase-3.4.11.3
25277cytochrome oxidase+1.9.3.1
25277esterase (C 4)+
25277esterase Lipase (C 8)+
25277leucine arylamidase+3.4.11.1
25277lipase (C 14)+
25277N-acetyl-beta-glucosaminidase+3.2.1.52
25277naphthol-AS-BI-phosphohydrolase+
25277trypsin-3.4.21.4
25277urease-3.5.1.5
25277valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25277C15:0 anteiso2.7
    25277C14:02
    25277C16:07.7
    25277C16:0 3OH1.3
    25277C16:1ω7c / C16:1ω6c9.6
    25277C17:0 2OH1.5
    25277C17:0 3OH3.5
    25277C17:1ω8c2.1
    25277C18:03.1
    25277C18:1ω7c / C18:1ω6c4.3
    25277C18:1ω9c2.7
    25277C15:0 iso9.4
    25277C15:0 iso 3OH1.1
    25277C15:1 iso G12
    25277C17:0 iso 3OH23.8
    25277C18:1 iso H4.3
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A
  • agar/liquid: agar
  • incubation temperature: 28
  • software version: Sherlock 6.0
  • library/peak naming table: TSBA 6
  • system: MIS MIDI
  • instrument: Hewlett Packard 6890N
  • method/protocol: Sasser 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture temperatureisolation procedure
25277till of glacierArctic glacier Midtre Lovenbreen near Ny- Ålesund, West Svalbard ArchipelagoNorwayNOREurope7410R2A agar (Becton Dickinson)28standard dilution plating method
67771From soilthe till of high Arctic glacier Midtre Lovenbreen near Ny-Alesund, West Svalbard Archipelago(N78°58′NorwayNOREurope78.966710.5833

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Glacier

Sequence information

16S sequences

  • @ref: 25277
  • description: Terrimonas sp. M1-33108 16S ribosomal RNA gene, partial sequence
  • accession: KX139009
  • length: 1460
  • database: nuccore
  • NCBI tax ID: 1867851

GC content

@refGC-contentmethod
2527745high performance liquid chromatography (HPLC)
6777145.0

External links

@ref: 25277

culture collection no.: CCTCC AB 2016103, KCTC 52448

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27902292Terrimonas crocea sp. nov., isolated from the till of a high Arctic glacier.Kim MC, Kang OC, Kim CM, Zhang Y, Liu Z, Wei Z, Huang Y, Danzeng W, Peng FInt J Syst Evol Microbiol10.1099/ijsem.0.0016892017Arctic Regions, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ice Cover/*microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Svalbard, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny28857731Terrimonas terrae sp. nov., isolated from the rhizosphere of a tomato plant.Kim SJ, Cho H, Ahn JH, Weon HY, Joa JH, Hong SB, Seok SJ, Kim JS, Kwon SWInt J Syst Evol Microbiol10.1099/ijsem.0.0021042017Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lycopersicon esculentum/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25277M. C. K. Kim, O. C.,Kim, C. M.,Zhang, Y.,Liu, Z.,Wei, Z.,Huang, Y.,Danzeng, W.,Peng, F.Terrimonas crocea sp. nov., isolated from the till of a high Arctic glacier10.1099/ijsem.0.001689IJSEM 67: 868-874 201727902292
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc