Strain identifier

BacDive ID: 133378

Type strain: Yes

Species: Dyella nitratireducens

Strain Designation: DHG59

NCBI tax ID(s): 1849580 (species)

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General

@ref: 25243

BacDive-ID: 133378

keywords: genome sequence, Bacteria, Gram-negative

description: Dyella nitratireducens DHG59 is a Gram-negative bacterium of the family Rhodanobacteraceae.

NCBI tax id

  • NCBI tax id: 1849580
  • Matching level: species

doi: 10.13145/bacdive133378.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Rhodanobacteraceae
  • genus: Dyella
  • species: Dyella nitratireducens
  • full scientific name: Dyella nitratireducens Chen et al. 2017

@ref: 25243

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Rhodanobacteraceae

genus: Dyella

species: Dyella nitratireducens

strain designation: DHG59

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.998

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.988

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25243C15:0 anteiso6.5
    25243C17:0 anteiso1.3
    25243C16:05.5
    25243C11:0 iso6.7
    25243C11:0 iso 3OH4.2
    25243C13:0 iso 3OH3.7
    25243C15:0 iso21.3
    25243C15:0 iso 2OH / C16:1ω7c8.7
    25243C16:0 iso8.1
    25243C17:0 iso6.3
    25243C17:1 iso ω9c19.7
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 2
  • system: MIS MIDI
  • method/protocol: Miller 1982
  • cutoff value:

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Dyella nitratireducens CGMCC 1.15439GCA_014642835scaffoldncbi1849580
66792Dyella nitratireducens strain CGMCC 1.154391849580.3wgspatric1849580

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno80.912no
gram-positiveno98.278no
anaerobicno99.428no
aerobicyes88.502no
halophileno95.474no
spore-formingno94.149no
glucose-utilyes92.996no
thermophileno98.896no
motileyes77.589no
glucose-fermentno85.126no

External links

@ref: 25243

culture collection no.: NBRC 111472, LMG 29201, CGMCC 1.15439

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27930272Dyella acidisoli sp. nov., D. flagellata sp. nov. and D. nitratireducens sp. nov., isolated from forest soil.Chen MH, Xia F, Lv YY, Zhou XY, Qiu LHInt J Syst Evol Microbiol10.1099/ijsem.0.0017162017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purificationTranscriptome
Phylogeny28581924Dyella lipolytica sp. nov., a lipolytic bacterium isolated from lower subtropical forest soil.Tang L, Chen MH, Nie XC, Ma MR, Qiu LHInt J Syst Evol Microbiol10.1099/ijsem.0.0020202017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Genes, Bacterial, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purificationTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25243M.-h. X. Chen, Fan,Lv, Ying-ying,Zhou, Xiang-yue,Qiu, Li-hongDyella acidisoli sp. nov., D. flagellata sp. nov. and D. nitratireducens sp. nov., isolated from forest soil10.1099/ijsem.0.001716IJSEM 67: 736-743 201727930272
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1