Strain identifier
BacDive ID: 133351
Type strain: 
Species: Paraburkholderia ribeironis
Strain history: <- P. Vandamme, BCCM/LMG, University Gent, Belgium <- L. Moulin, UMR IPME, Centre IRD France Sud, Montpellier, France <- F. de Faria, EMBRAPA-Agrobiologia, Rio de Janeiro, Brazil
NCBI tax ID(s): 1247936 (species)
General
@ref: 64144
BacDive-ID: 133351
DSM-Number: 101188
keywords: 16S sequence, Bacteria, mesophilic
description: Paraburkholderia ribeironis DSM 101188 is a mesophilic bacterium that was isolated from root nodule of Piptadenia gonoacantha.
NCBI tax id
- NCBI tax id: 1247936
- Matching level: species
strain history
- @ref: 64144
- history: <- P. Vandamme, BCCM/LMG, University Gent, Belgium <- L. Moulin, UMR IPME, Centre IRD France Sud, Montpellier, France <- F. de Faria, EMBRAPA-Agrobiologia, Rio de Janeiro, Brazil
doi: 10.13145/bacdive133351.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Paraburkholderia
- species: Paraburkholderia ribeironis
- full scientific name: Paraburkholderia ribeironis Bournaud et al. 2017
@ref: 64144
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Paraburkholderia
species: Paraburkholderia ribeironis
full scientific name: Paraburkholderia ribeironis Bournaud et al. 2017
type strain: yes
Culture and growth conditions
culture medium
- @ref: 64144
- name: RHIZOBIUM MEDIUM (DSMZ Medium 98)
- growth: yes
- link: https://mediadive.dsmz.de/medium/98
- composition: Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
culture temp
- @ref: 64144
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 64144
- sample type: root nodule of Piptadenia gonoacantha
- geographic location: Cabo Frio (Rio de Janeiro, 22° 26' 42'', S 41° 51' 41'' W)
- country: Brazil
- origin.country: BRA
- continent: Middle and South America
- latitude: -22.445
- longitude: -41.8614
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Plant | #Root nodule |
| #Host | #Plants | #Shrub (Scrub) |
| #Host | #Plants | #Tree |
Safety information
risk assessment
- @ref: 64144
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 64144
- description: Burkholderia sp. STM 7296 partial 16S rRNA gene, type strain STM 7296T
- accession: LN875221
- length: 1469
- database: ena
- NCBI tax ID: 1247936
GC content
| @ref | GC-content | method |
|---|---|---|
| 64144 | 62.48 | sequence analysis |
| 64144 | 62.4 | high performance liquid chromatography (HPLC) |
External links
@ref: 64144
culture collection no.: DSM 101188, LMG 29351, STM 7296
straininfo link
- @ref: 91418
- straininfo: 399842
literature
- topic: Phylogeny
- Pubmed-ID: 27902255
- title: Paraburkholderia piptadeniae sp. nov. and Paraburkholderia ribeironis sp. nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil.
- authors: Bournaud C, Moulin L, Cnockaert M, Faria S, Prin Y, Severac D, Vandamme P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001648
- year: 2017
- mesh: Bacterial Typing Techniques, Base Composition, Brazil, Burkholderia/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fabaceae/*microbiology, Genes, Bacterial, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Symbiosis
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 64144 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101188 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101188) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 91418 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399842.1 |