Strain identifier

BacDive ID: 133304

Type strain: Yes

Species: Tersicoccus solisilvae

Strain Designation: 36A

NCBI tax ID(s): 1882339 (species)

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General

@ref: 25113

BacDive-ID: 133304

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive, coccus-shaped, colony-forming

description: Tersicoccus solisilvae 36A is an aerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from forest soil sample.

NCBI tax id

  • NCBI tax id: 1882339
  • Matching level: species

doi: 10.13145/bacdive133304.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Tersicoccus
  • species: Tersicoccus solisilvae
  • full scientific name: Tersicoccus solisilvae Sultanpuram et al. 2016

@ref: 25113

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Tersicoccus

species: Tersicoccus solisilvae

strain designation: 36A

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
25113positivecoccus-shapedno
69480positive100

colony morphology

  • @ref: 25113
  • colony size: 1.0-1.5 mm
  • colony color: yellow
  • colony shape: circular
  • medium used: tryptone soya broth

Culture and growth conditions

culture medium

  • @ref: 25113
  • name: tryptone soya broth
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25113positivegrowth16-55
25113positiveoptimum37mesophilic

culture pH

@refabilitytypepH
25113positivegrowth6.0-8.0
25113positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 25113
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no99
69480no99.913

halophily

@refsaltgrowthtested relationconcentration
25113NaClpositiveminimum0.5 %(w/v)
25113NaCloptimum0.5-3.0 %(w/v)
25113NaClpositivemaximum6 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2511331206ammonium chloride-growth
2511322599arabinose-builds gas from
2511322599arabinose-builds acid from
2511335391aspartate-growth
2511328260galactose-builds gas from
2511328260galactose-builds acid from
2511317234glucose-carbon source
2511317234glucose-fermentation
2511317268myo-inositol-carbon source
2511315443inulin-carbon source
2511317716lactose-builds gas from
2511317716lactose-builds acid from
2511317716lactose-fermentation
2511317306maltose-carbon source
2511317306maltose-fermentation
2511337684mannose-carbon source
2511337684mannose-fermentation
2511317632nitrate-growth
2511316301nitrite-growth
2511316634raffinose-carbon source
2511326546rhamnose-carbon source
2511317814salicin-carbon source
2511330911sorbitol-carbon source
2511317992sucrose-carbon source
2511327082trehalose-builds gas from
2511327082trehalose-builds acid from
2511318222xylose-carbon source
2511318222xylose-fermentation
2511322599arabinose+builds gas from
2511322599arabinose+builds acid from
2511322599arabinose+carbon source
2511328260galactose+carbon source
2511329987glutamate+nitrogen source
2511315428glycine+nitrogen source
2511317716lactose+carbon source
2511329864mannitol+builds gas from
2511329864mannitol+builds acid from
2511329864mannitol+fermentation
2511328053melibiose+builds gas from
2511328053melibiose+builds acid from
2511326710sodium chloride+required for growth
2511327082trehalose+carbon source
2511318186tyrosine+nitrogen source
2511316199urea+nitrogen source

enzymes

@refvalueactivityec
25113acid phosphatase+3.1.3.2
25113acid phosphatase-3.1.3.2
25113alkaline phosphatase-3.1.3.1
25113alpha-chymotrypsin-3.4.21.1
25113alpha-galactosidase-3.2.1.22
25113alpha-glucosidase-3.2.1.20
25113alpha-mannosidase-3.2.1.24
25113beta-galactosidase-3.2.1.23
25113beta-glucosidase-3.2.1.21
25113beta-glucuronidase-3.2.1.31
25113catalase-1.11.1.6
25113cystine arylamidase-3.4.11.3
25113cytochrome oxidase+1.9.3.1
25113esterase (C 4)+
25113esterase lipase (C 8)+
25113leucine arylamidase+3.4.11.1
25113lipase (C 14)-
25113N-acetyl-beta-glucosaminidase-3.2.1.52
25113naphthol-AS-BI-phosphohydrolase+
25113trypsin+3.4.21.4
25113valine arylamidase-

Isolation, sampling and environmental information

isolation

  • @ref: 25113
  • sample type: forest soil sample
  • geographic location: Western Ghats near Munnar
  • country: India
  • origin.country: IND
  • continent: Asia
  • latitude: 10
  • longitude: 77

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

Sequence information

16S sequences

  • @ref: 25113
  • description: Tersicoccus sp. 36AT partial 16S rRNA gene, strain 36AT
  • accession: LT601574
  • length: 1447
  • database: nuccore
  • NCBI tax ID: 1882339

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Tersicoccus solisilvae CGMCC 1.15480GCA_014643255contigncbi1882339
66792Tersicoccus solisilvae strain CGMCC 1.154801882339.3wgspatric1882339

GC content

  • @ref: 25113
  • GC-content: 70.9
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
motileno55.948yes
gram-positiveyes88.179yes
anaerobicno99.544yes
aerobicyes93.704yes
halophileno86.82no
spore-formingno92.803no
glucose-utilyes78.078yes
flagellatedno92.531yes
glucose-fermentno86.884no
thermophileno91.695yes

External links

@ref: 25113

culture collection no.: KCTC 33776, CGMCC 1.15480

literature

  • topic: Phylogeny
  • Pubmed-ID: 27609499
  • title: Tersicoccus solisilvae sp., nov., a bacterium isolated from forest soil.
  • authors: Sultanpuram VR, Mothe T, Chintalapati S, Chintalapati VR
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001470
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, India, Micrococcaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25113V. R. M. Sultanpuram, T.,Chintalapati, S.,Chintalapati, V. R.Tersicoccus solisilvae sp., nov., a bacterium isolated from forest soil10.1099/ijsem.0.001470IJSEM 66: 5061-5065 201627609499
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1