Strain identifier

BacDive ID: 133258

Type strain: Yes

Species: Algoriphagus litorisediminis

Strain Designation: OITF-19

Strain history: <- Jung-Hoon Yoon, Sungkyunkwan Univ.

NCBI tax ID(s): 1888911 (species)

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General

@ref: 25064

BacDive-ID: 133258

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Algoriphagus litorisediminis OITF-19 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from tidal flat.

NCBI tax id

  • NCBI tax id: 1888911
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Jung-Hoon Yoon, Sungkyunkwan Univ.

doi: 10.13145/bacdive133258.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Cyclobacteriaceae
  • genus: Algoriphagus
  • species: Algoriphagus litorisediminis
  • full scientific name: Algoriphagus litorisediminis Park et al. 2016

@ref: 25064

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Cyclobacteriaceae

genus: Algoriphagus

species: Algoriphagus litorisediminis

strain designation: OITF-19

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
25064negative0.4-10.0 µm0.2-0.4 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 25064
  • colony size: 0.5-1.0 mm
  • colony color: dark orange
  • colony shape: circular
  • incubation period: 3 days
  • medium used: MA agar

pigmentation

  • @ref: 25064
  • production: no
  • name: no Flexirubin-type pigments

Culture and growth conditions

culture medium

  • @ref: 25064
  • name: MA agar
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25064positivegrowth4-35
25064nogrowth37mesophilic
25064positiveoptimum30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
25064nogrowth5.5
25064positivegrowth6
25064positiveoptimum7.0-8.0

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
25064aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
25064NaClpositivegrowth0-7.0 %(w/v)
25064NaCloptimum2 %(w/v)

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2506429985L-glutamate-energy source
2506429985L-glutamate-carbon source
2506430089acetate-energy source
2506430089acetate-carbon source
2506416150benzoate-energy source
2506416150benzoate-carbon source
2506416947citrate-energy source
2506416947citrate-carbon source
2506416899D-mannitol-builds acid from
2506417924D-sorbitol-builds acid from
2506415740formate-energy source
2506415740formate-carbon source
250645291gelatin-hydrolysis
2506417368hypoxanthine-hydrolysis
2506417268myo-inositol-builds acid from
2506430849L-arabinose-energy source
2506430849L-arabinose-carbon source
2506415589L-malate-energy source
2506415589L-malate-carbon source
2506417632nitrate-reduction
2506415361pyruvate-energy source
2506415361pyruvate-carbon source
2506428017starch-hydrolysis
2506430031succinate-energy source
2506430031succinate-carbon source
2506453426tween 80-hydrolysis
2506416199urea-hydrolysis
2506415318xanthine-hydrolysis
25064casein+hydrolysis
2506417057cellobiose+energy source
2506417057cellobiose+carbon source
2506417057cellobiose+builds acid from
2506415824D-fructose+energy source
2506415824D-fructose+carbon source
2506415824D-fructose+builds acid from
2506412936D-galactose+energy source
2506412936D-galactose+carbon source
2506412936D-galactose+builds acid from
2506417634D-glucose+energy source
2506417634D-glucose+carbon source
2506417634D-glucose+builds acid from
2506416024D-mannose+energy source
2506416024D-mannose+carbon source
2506416024D-mannose+builds acid from
2506416988D-ribose+builds acid from
2506465327D-xylose+energy source
2506465327D-xylose+carbon source
2506465327D-xylose+builds acid from
250644853esculin+hydrolysis
2506430849L-arabinose+builds acid from
2506462345L-rhamnose+builds acid from
2506417895L-tyrosine+hydrolysis
2506417716lactose+builds acid from
2506418420magnesium(2+)+required for growth
2506417306maltose+energy source
2506417306maltose+carbon source
2506417306maltose+builds acid from
250646731melezitose+builds acid from
2506428053melibiose+builds acid from
2506416634raffinose+builds acid from
2506417814salicin+energy source
2506417814salicin+carbon source
2506417992sucrose+energy source
2506417992sucrose+carbon source
2506417992sucrose+builds acid from
2506427082trehalose+energy source
2506427082trehalose+carbon source
2506427082trehalose+builds acid from

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitive
250643393carbenicillinyesyes
25064124991cefalotinyesyes
2506418208penicillin gyesno
2506427902tetracyclineyesno
2506428971ampicillinyesyes
2506417833gentamicinyesyes
250646104kanamycinyesyes
250647507neomycinyesyes
250648309polymyxin byesyes
2506417076streptomycinyesyes

enzymes

@refvalueactivityec
25064acid phosphatase+3.1.3.2
25064alkaline phosphatase+3.1.3.1
25064alpha-chymotrypsin+3.4.21.1
25064alpha-fucosidase-3.2.1.51
25064alpha-galactosidase-3.2.1.22
25064alpha-glucosidase+3.2.1.20
25064alpha-mannosidase-3.2.1.24
25064beta-galactosidase+3.2.1.23
25064beta-glucosidase+3.2.1.21
25064beta-glucuronidase-3.2.1.31
25064catalase+1.11.1.6
25064cystine arylamidase-3.4.11.3
25064cytochrome oxidase+1.9.3.1
25064esterase (C 4)+
25064esterase lipase (C 8)+
25064leucine arylamidase+3.4.11.1
25064lipase (C 14)-
25064N-acetyl-beta-glucosaminidase+3.2.1.52
25064naphthol-AS-BI-phosphohydrolase+
25064trypsin-3.4.21.4
25064valine arylamidase-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture temperatureisolation procedure
25064tidal flatOido, Yellow SeaRepublic of KoreaKORAsiamarine agar 2216 (MA; BD Difco)25standard dilution plate method
67771From a tidal flatoido, an island on the Yellow SeaRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Tidal flat

Sequence information

16S sequences

  • @ref: 25064
  • description: Algoriphagus sp. OITF-19 16S ribosomal RNA gene, partial sequence
  • accession: KX578604
  • length: 1444
  • database: nuccore
  • NCBI tax ID: 1888911

GC content

@refGC-contentmethod
2506438.3high performance liquid chromatography (HPLC)
6777138.3

External links

@ref: 25064

culture collection no.: KCTC 52456, NBRC 112418

literature

  • topic: Phylogeny
  • Pubmed-ID: 27707431
  • title: Algoriphagus litorisediminis sp. nov., isolated from a tidal flat.
  • authors: Park S, Ha MJ, Yoon SY, Jung YT, Yoon JH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001538
  • year: 2016
  • mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phosphatidylcholines/chemistry, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25064S. H. Park, M. J.,Yoon, S. Y.,Jung, Y. T.,Yoon, J. H.Algoriphagus litorisediminis sp. nov., isolated from a tidal flat10.1099/ijsem.0.001538IJSEM 66: 5437-5443 201627707431
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc