Strain identifier

BacDive ID: 133234

Type strain: Yes

Species: Nocardiopsis akesuensis

NCBI tax ID(s): 1236269 (species)

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General

@ref: 25127

BacDive-ID: 133234

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive

description: Nocardiopsis akesuensis TRM 46250 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from salt water beach.

NCBI tax id

  • NCBI tax id: 1236269
  • Matching level: species

doi: 10.13145/bacdive133234.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Nocardiopsidaceae
  • genus: Nocardiopsis
  • species: Nocardiopsis akesuensis
  • full scientific name: Nocardiopsis akesuensis Gao et al. 2016

@ref: 25127

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptosporangiales

family: Nocardiopsaceae

genus: Nocardiopsis

species: Nocardiopsis akesuensis

type strain: yes

Morphology

cell morphology

  • @ref: 25127
  • gram stain: positive

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
25127positivegrowth25-50
25127positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
25127positivegrowth6.0-11.0alkaliphile
25127positiveoptimum7.0-9.0

Physiology and metabolism

oxygen tolerance

  • @ref: 25127
  • oxygen tolerance: aerobe

spore formation

  • @ref: 25127
  • spore description: smooth Spore shape
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
25127NaClpositivegrowth0-10.0 %(w/v)
25127NaCloptimum2 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2512722599arabinose-carbon source
2512717057cellobiose-carbon source
2512762968cellulose-hydrolysis
2512716261chitosan-carbon source
2512712936D-galactose-carbon source
2512765327D-xylose-carbon source
2512728757fructose-carbon source
2512717268myo-inositol-carbon source
2512717266L-sorbose-carbon source
2512717716lactose-carbon source
2512717306maltose-carbon source
251276731melezitose-carbon source
2512717632nitrate-reduction
2512716634raffinose-carbon source
2512733942ribose-carbon source
2512717814salicin-carbon source
2512728017starch-hydrolysis
2512717992sucrose-carbon source
2512737166xylan-carbon source
2512717151xylitol-carbon source
2512717234glucose+carbon source
2512718287L-fucose+carbon source
2512762345L-rhamnose+carbon source
2512753424tween 20+hydrolysis
2512753423tween 40+hydrolysis
2512753425tween 60+hydrolysis
2512753426tween 80+hydrolysis

enzymes

@refvalueactivityec
25127catalase+1.11.1.6
25127cytochrome oxidase+1.9.3.1
25127urease-3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 25127
  • sample type: salt water beach
  • geographic location: Akesu city, Gobi desert, in Baicheng, Xinjiang province, altitude of 1385m
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 41
  • longitude: 81
  • enrichment culture: ISP (International Streptomyces Project) medium 4
  • enrichment culture composition: per litre distilled water: 10.0g Difco soluble starch, 1.0g K2HPO4, 1.0g MgSO4.7H2O, 1.0g NaCl, 2.0g (NH4)2SO4, 2.0g CaCO3, 1.0ml trace salts solution and 20g agar
  • enrichment culture duration: 7 days
  • enrichment culture temperature: 28

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Environmental#Terrestrial#Coast
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_104459.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_152;96_2754;97_14972;98_71134;99_104459&stattab=map
  • Last taxonomy: Nocardiopsis
  • 16S sequence: KU860457
  • Sequence Identity:
  • Total samples: 4
  • soil counts: 3
  • animal counts: 1

Sequence information

16S sequences

  • @ref: 25127
  • description: Nocardiopsis sp. TRM46250 16S ribosomal RNA gene, partial sequence
  • accession: KU860457
  • length: 1413
  • database: nuccore
  • NCBI tax ID: 1236269

GC content

  • @ref: 25127
  • GC-content: 71.05
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25127

culture collection no.: TRM 46250, CCTCC AA 2015027, KCTC 39725

literature

  • topic: Phylogeny
  • Pubmed-ID: 27565851
  • title: Nocardiopsis akesuensis sp. nov., an actinomycete isolated from a salt water beach.
  • authors: Gao GB, Luo XX, Xia ZF, Zhang Y, Wan CX, Zhang LL
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001460
  • year: 2016
  • mesh: Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25127G. B. L. Gao, X. X.,Xia, Z. F.,Zhang, Y.,Wan, C. X.,Zhang, L. L.Nocardiopsis akesuensis sp. nov., an actinomycete isolated from a salt water beach10.1099/ijsem.0.001460IJSEM 66: 5005-5009 201627565851
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/