Strain identifier

BacDive ID: 133205

Type strain: Yes

Species: Alteribacillus alkaliphilus

Strain Designation: JC229

Strain history: <- Ch. Sasikala, Jawaharlal Nehru Technological Univ.

NCBI tax ID(s): 1448272 (species)

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General

@ref: 25003

BacDive-ID: 133205

keywords: 16S sequence, Bacteria, obligate aerobe, spore-forming, Gram-positive, rod-shaped, colony-forming

description: Alteribacillus alkaliphilus JC229 is an obligate aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from water sample collected from an uncultivated agricultural field.

NCBI tax id

  • NCBI tax id: 1448272
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Ch. Sasikala, Jawaharlal Nehru Technological Univ.

doi: 10.13145/bacdive133205.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Alteribacillus
  • species: Alteribacillus alkaliphilus
  • full scientific name: Alteribacillus alkaliphilus Azmatunnisa Begum et al. 2016

@ref: 25003

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Alteribacillus

species: Alteribacillus alkaliphilus

strain designation: JC229

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
25003positive2.0-4.0 µm1.0-2.0 µmrod-shapedno
67771rod-shaped
67771positive

colony morphology

  • @ref: 25003
  • colony color: creamish white
  • colony shape: circular
  • medium used: marine agar

Culture and growth conditions

culture medium

  • @ref: 25003
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25003positivegrowth20-50
25003positiveoptimum35-40
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
25003positivegrowth5.0-11.0alkaliphile
25003positiveoptimum8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
25003obligate aerobe
67771aerobe

spore formation

  • @ref: 25003
  • type of spore: endospore
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
25003NaClpositivegrowth0.5-24.0 %(w/v)
25003NaCloptimum3.0-5.0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2500316947citrate-carbon source
2500312936D-galactose-builds gas from
2500312936D-galactose-builds acid from
2500316899D-mannitol-builds acid from
2500365327D-xylose-builds gas from
2500365327D-xylose-builds acid from
250034853esculin-hydrolysis
250035291gelatin-hydrolysis
2500317234glucose-fermentation
2500317716lactose-builds gas from
2500317716lactose-builds acid from
2500317632nitrate-reduction
2500317814salicin-builds gas from
2500317814salicin-builds acid from
2500317992sucrose-builds gas from
2500317992sucrose-builds acid from
2500327897tryptophan-energy source
2500353426tween 80-hydrolysis
2500316199urea-hydrolysis
2500316651(S)-lactate+carbon source
2500316651(S)-lactate+energy source
2500317057cellobiose+carbon source
2500317057cellobiose+energy source
2500317108D-arabinose+carbon source
2500317108D-arabinose+energy source
2500315824D-fructose+builds acid from
2500317924D-sorbitol+builds acid from
2500317234glucose+builds acid from
2500317754glycerol+carbon source
2500317754glycerol+energy source
2500317196L-asparagine+carbon source
2500317196L-asparagine+energy source
2500317306maltose+builds acid from
2500316811methionine+carbon source
2500316811methionine+energy source
2500316634raffinose+builds acid from
2500326710sodium chloride+required for growth
2500328017starch+hydrolysis
2500317992sucrose+carbon source
2500317992sucrose+energy source
2500327082trehalose+builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
2500315688acetoinno
2500335581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-testindole test
2500317234glucose-
2500315688acetoin-
2500335581indole-

enzymes

@refvalueactivityec
25003arginine dihydrolase-3.5.3.6
25003catalase+1.11.1.6
25003cytochrome oxidase+1.9.3.1
25003lysine decarboxylase-4.1.1.18
25003ornithine decarboxylase-4.1.1.17
25003phenylalanine deaminase-4.3.1.5
25003tryptophan deaminase-4.1.99.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment culture temperatureisolation date
25003water sample collected from an uncultivated agricultural fieldRachalpalle village, TelanganaIndiaINDAsia302013-11
67771From water sample, an uncultivated agricultural fieldRachalpalle village, Telangana, Andhra PradeshIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_101080.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_605;96_10605;97_12823;98_69058;99_101080&stattab=map
  • Last taxonomy: Alteribacillus alkaliphilus
  • 16S sequence: HG799487
  • Sequence Identity:
  • Total samples: 6
  • soil counts: 4
  • animal counts: 1
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 25003
  • description: Alteribacillus sp. JC229 partial 16S rRNA gene, strain JC229
  • accession: HG799487
  • length: 1439
  • database: nuccore
  • NCBI tax ID: 1448272

GC content

@refGC-contentmethod
2500340.2high performance liquid chromatography (HPLC)
6777140.2

External links

@ref: 25003

culture collection no.: LMG 28999, KCTC 33726

literature

  • topic: Phylogeny
  • Pubmed-ID: 27530438
  • title: Description of Alteribacillus alkaliphilus sp. nov., reassignment of Bacillus iranensis (Bagheri et al. 2012) as Alteribacillus iranensis comb. nov. and emended description of the genus Alteribacillus.
  • authors: Azmatunnisa Begum M, Varshini V, Rahul K, Chandana A, Sasikala C, Ramana CV
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001428
  • year: 2016
  • mesh: Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25003M. V. Azmatunnisa Begum, V.,Rahul, K.,Chandana, A.,Sasikala, C.,Ramana, C. V.Description of Alteribacillus alkaliphilus sp. nov., reassignment of Bacillus iranensis (Bagheri et al. 2012) as Alteribacillus iranensis comb. nov. and emended description of the genus Alteribacillus10.1099/ijsem.0.001428IJSEM 66: 4772-4778 201627530438
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/