Strain identifier

BacDive ID: 133128

Type strain: Yes

Species: Paraburkholderia ginsengiterrae

Strain Designation: DCY85-1

Strain history: <- Deok-Chun Yang, Kyung Hee Univ.

NCBI tax ID(s): 1462993 (species)

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General

@ref: 24948

BacDive-ID: 133128

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Paraburkholderia ginsengiterrae DCY85-1 is an aerobe, mesophilic bacterium that was isolated from Rhizosphere of ginseng.

NCBI tax id

  • NCBI tax id: 1462993
  • Matching level: species

strain history

@refhistory
67770D.-C. Yang and Y.-J. Kim DCY85-1.
67771<- Deok-Chun Yang, Kyung Hee Univ.

doi: 10.13145/bacdive133128.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Paraburkholderia
  • species: Paraburkholderia ginsengiterrae
  • full scientific name: Paraburkholderia ginsengiterrae (Farh et al. 2015) Dobritsa and Samadpour 2016

  • synonyms

    @refsynonym
    20215Paraburkholderia panaciterrae
    20215Burkholderia panaciterrae
    20215Burkholderia ginsengiterrae

@ref: 24948

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Paraburkholderia

species: Paraburkholderia ginsengiterrae

strain designation: DCY85-1

type strain: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
67770Rhizosphere of ginsengGochang ProvinceRepublic of KoreaKORAsia
67771From rhizosphere of ginsengRepublic of KoreaKORAsia

taxonmaps

  • @ref: 69479
  • File name: preview.99_5838.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_173;97_187;98_4340;99_5838&stattab=map
  • Last taxonomy: Paraburkholderia ginsengiterrae
  • 16S sequence: KX233695
  • Sequence Identity:
  • Total samples: 1169
  • soil counts: 799
  • aquatic counts: 31
  • animal counts: 184
  • plant counts: 155

Sequence information

16S sequences

@refdescriptionaccessiondatabaselengthNCBI tax ID
2494816S rRNAKX233695nuccore
67770Burkholderia sp. DCY85-1 16S ribosomal RNA gene, partial sequenceKF999960ena14481462993

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paraburkholderia ginsengiterrae DCY85-12744054900draftimg1462993
67770Paraburkholderia ginsengiterrae DCY85-1GCA_001645135contigncbi1462993

GC content

  • @ref: 24948
  • GC-content: 62.4-62.5

External links

@ref: 24948

culture collection no.: KCTC 42055, JCM 19889

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25537097Burkholderia ginsengiterrae sp. nov. and Burkholderia panaciterrae sp. nov., antagonistic bacteria against root rot pathogen Cylindrocarpon destructans, isolated from ginseng soil.Farh Mel-A, Kim YJ, Van An H, Sukweenadhi J, Singh P, Huq MA, Yang DCArch Microbiol10.1007/s00203-014-1075-y2014Anti-Bacterial Agents/pharmacology, *Antibiosis, Base Composition, Burkholderia/*classification/drug effects/genetics/isolation & purification/*physiology, Fatty Acids/analysis, Genes, Bacterial/genetics, Molecular Sequence Data, Panax/*microbiology, Phospholipids/analysis, Phylogeny, Republic of Korea, *Soil Microbiology, Species SpecificityGenetics
Phylogeny27432167Reclassification of Paraburkholderia panaciterrae (Farh et al. 2015) Dobritsa & Samadpour 2016 as a later synonym of Paraburkholderia ginsengiterrae (Farh et al. 2015) Dobritsa & Samadpour 2016.Dobritsa AP, Kutumbaka KK, Samadpour MInt J Syst Evol Microbiol10.1099/ijsem.0.0013142016Bacterial Typing Techniques, Base Composition, Burkholderia/*classification, DNA, Bacterial/genetics, *Phylogeny, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24948A. P. K. Dobritsa, Kirthi K.,Samadpour, MansourReclassification of Paraburkholderia panaciterrae (Farh et al. 2015) Dobritsa & Samadpour 2016 as a later synonym of Paraburkholderia ginsengiterrae (Farh et al. 2015) Dobritsa & Samadpour 201610.1099/ijsem.0.001314IJSEM 66: 4085-4087 201627432167
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/