Strain identifier

BacDive ID: 133105

Type strain: Yes

Species: Streptomyces lasiicapitis

Strain Designation: 3H-HV17(2)

Strain history: <- C. Liu, School of Life Science, Northeast Agricultural University; 3H-HV17(2)

NCBI tax ID(s): 1923961 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 8.1 (current version)

General

@ref: 66477

BacDive-ID: 133105

DSM-Number: 103124

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive

description: Streptomyces lasiicapitis 3H-HV17 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from head of an ant , collected from Northeast Agriculture University.

NCBI tax id

  • NCBI tax id: 1923961
  • Matching level: species

strain history

  • @ref: 66477
  • history: <- C. Liu, School of Life Science, Northeast Agricultural University; 3H-HV17(2)

doi: 10.13145/bacdive133105.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces lasiicapitis
  • full scientific name: Streptomyces lasiicapitis Ye et al. 2017

@ref: 66477

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces lasiicapitis

full scientific name: Streptomyces lasiicapitis Ye et al. 2017

strain designation: 3H-HV17(2)

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
25306positiveno
69480positive100

multicellular morphology

  • @ref: 25306
  • forms multicellular complex: yes
  • further description: well-developed substrate mycelium and aerial hyphae that differentiate into long, straight to flexuous spore chains

pigmentation

@refproductionname
25306nodiffusible pigment
25306nomelanin

multimedia

  • @ref: 66477
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_103124.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
25306ISP1yes
25306ISP2yes
25306ISP3yes
25306ISP4yes
25306ISP5yes
25306ISP7yes
25306Nutrient agar (NA)yes
25306Czapek’s agaryes
25306MBA (modified Bennett’s agar)yes
66477GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
25306positivegrowth10-38
25306positiveoptimum28mesophilic
66477positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
25306positivegrowth4.0-9.0alkaliphile
25306positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 25306
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

halophily

  • @ref: 25306
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-9 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2530617057cellobiose-degradation
253065291gelatin-degradation
2530617632nitrate-reduction
2530653423tween 40-hydrolysis
2530636219alpha-lactose+carbon source
2530616919creatine+nitrogen source
2530615824D-fructose+carbon source
2530612936D-galactose+carbon source
2530617634D-glucose+carbon source
2530616899D-mannitol+carbon source
2530616024D-mannose+carbon source
2530616988D-ribose+carbon source
2530617924D-sorbitol+carbon source
2530665327D-xylose+carbon source
253064853esculin+hydrolysis
2530615428glycine+nitrogen source
2530617268myo-inositol+carbon source
2530616977L-alanine+nitrogen source
2530630849L-arabinose+carbon source
2530616467L-arginine+nitrogen source
2530617196L-asparagine+nitrogen source
2530629991L-aspartate+nitrogen source
2530629985L-glutamate+nitrogen source
2530618050L-glutamine+nitrogen source
2530617203L-proline+nitrogen source
2530662345L-rhamnose+carbon source
2530617115L-serine+nitrogen source
2530616857L-threonine+nitrogen source
2530617895L-tyrosine+nitrogen source
2530617306maltose+carbon source
25306milk+degradation
25306milk+
2530616634raffinose+carbon source
2530628017starch+hydrolysis
2530617992sucrose+carbon source
2530653424tween 20+hydrolysis
2530653426tween 80+hydrolysis

metabolite production

  • @ref: 25306
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
25306catalase+1.11.1.6
25306urease+3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25306C17:0 anteiso14.9
    25306C16:012.2
    25306C18:08.9
    25306C15:0 iso47.3
    25306C16:0 iso16.7
  • type of FA analysis: whole cell analysis
  • incubation medium: ISP2
  • agar/liquid: liquid
  • incubation temperature: 28
  • incubation time: 7
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

  • @ref: 25306
  • sample type: head of an ant (Lasius fuliginosus L.), collected from Northeast Agriculture University
  • geographic location: Harbin, Heilongjiang, China
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

  • Cat1: #Host
  • Cat2: #Arthropoda
  • Cat3: #Insecta

Safety information

risk assessment

  • @ref: 66477
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
2530616S rRNA gene and gyrB sequencesKX7775891521ena1931
2530616S rRNA gene and gyrB sequencesKY2290661195ena1923961

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces lasiicapitis CGMCC 4.7349GCA_014646335scaffoldncbi1923961
66792Streptomyces lasiicapitis strain CGMCC 4.73491923961.3wgspatric1923961

GC content

  • @ref: 66477
  • GC-content: 70.8
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno98.005yes
gram-positiveyes89.868no
anaerobicno99.271yes
aerobicyes90.969no
halophileno91.749no
spore-formingyes94.746no
thermophileno98.729yes
glucose-utilyes88.295yes
motileno93.548no
glucose-fermentno87.723no

External links

@ref: 66477

culture collection no.: CGMCC 4.7349, DSM 103124

straininfo link

  • @ref: 91367
  • straininfo: 397741

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28005517Streptomyces lasiicapitis sp. nov., an actinomycete that produces kanchanamycin, isolated from the head of an ant (Lasius fuliginosus L.).Ye L, Zhao S, Li Y, Jiang S, Zhao Y, Li J, Yan K, Wang X, Xiang W, Liu CInt J Syst Evol Microbiol10.1099/ijsem.0.0017562017Animals, Ants/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, Genes, Bacterial, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purificationTranscriptome
Phylogeny32372105Antimicrobial and Antioxidant Effects of a Forest Actinobacterium V002 as New Producer of Spectinabilin, Undecylprodigiosin and Metacycloprodigiosin.Gacem MA, Ould-El-Hadj-Khelil A, Boudjemaa B, Wink JCurr Microbiol10.1007/s00284-020-02007-12020Algeria, *Anti-Infective Agents, *Antioxidants, DNA, Bacterial, Fatty Acids, Forests, Phylogeny, Prodigiosin/analogs & derivatives, Pyrones, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, StreptomycesTranscriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25306L. Z. Ye, S.,Li, Y.,Jiang, S.,Zhao, Y.,Li, J.,Yan, K.,Wang, X.,Xiang, W.,Liu, C.Streptomyces lasiicapitis sp. nov., an actinomycete that produces kanchanamycin, isolated from the head of an ant (Lasius fuliginosus L.)10.1099/ijsem.0.001756IJSEM 67: 1529-1534 201728005517
66477Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103124Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103124)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91367Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397741.1