Strain identifier
BacDive ID: 133066
Type strain: 
Species: Salinivirga cyanobacteriivorans
Strain Designation: L21-Spi-D4
Strain history: <- Stefan Spring, DSM
NCBI tax ID(s): 1307839 (species)
version 8.1 (current version)
General
@ref: 24854
BacDive-ID: 133066
DSM-Number: 27204
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, rod-shaped
description: Salinivirga cyanobacteriivorans L21-Spi-D4 is an anaerobe, mesophilic, rod-shaped bacterium that was isolated from hypersaline microbial mat.
NCBI tax id
- NCBI tax id: 1307839
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24854 | <- S. Spring, Leibniz-Institut DSMZ GmbH; L21-Spi-D4 |
| 67770 | S. Spring; DSMZ, Germany; L21-Spi-D4. |
| 67771 | <- Stefan Spring, DSM |
doi: 10.13145/bacdive133066.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Salinivirgaceae
- genus: Salinivirga
- species: Salinivirga cyanobacteriivorans
- full scientific name: Salinivirga cyanobacteriivorans Ben Hania et al. 2017
@ref: 24854
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Salinivirgaceae
genus: Salinivirga
species: Salinivirga cyanobacteriivorans
full scientific name: Salinivirga cyanobacteriivorans Ben Hania et al. 2017
strain designation: L21-Spi-D4
type strain: yes
Morphology
cell morphology
| @ref | cell shape | gram stain | confidence |
|---|---|---|---|
| 67771 | rod-shaped | ||
| 67771 | curved-shaped | ||
| 67771 | negative | ||
| 69480 | negative | 99.999 |
Culture and growth conditions
culture medium
- @ref: 24854
- name: SALINIVIRGA (L21 HS) MEDIUM (DSMZ Medium 1527a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1527a
- composition: Name: SALINIVIRGA (L21 HS) MEDIUM (DSMZ Medium 1527a) Composition: MgCl2 x 6 H2O 5.93472 g/l Na2CO3 1.48368 g/l KCl 1.48368 g/l Yeast extract 0.98912 g/l Na2SO4 0.98912 g/l NH4Cl 0.98912 g/l Trypticase peptone 0.98912 g/l D-Glucose 0.98912 g/l Na2S x 9 H2O 0.49456 g/l L-Cysteine HCl x H2O 0.49456 g/l K2HPO4 0.395648 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l CoSO4 x 7 H2O 0.00178042 g/l ZnSO4 x 7 H2O 0.00178042 g/l FeSO4 x 7 H2O 0.00098912 g/l CaCl2 x 2 H2O 0.00098912 g/l Sodium resazurin 0.00049456 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l CuSO4 x 5 H2O 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l Riboflavin 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 24854 | positive | growth | 35 | mesophilic |
| 67770 | positive | growth | 35 | mesophilic |
| 67771 | positive | growth | 35 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 67771 | anaerobe | |
| 69480 | anaerobe | 97.887 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.646 |
observation
| @ref | observation |
|---|---|
| 67770 | quinones: MK-7 |
| 67771 | quinones: MK-7 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 24854 | hypersaline microbial mat | Kiritimati, Lake 21 | Kiribati | KIR | Australia and Oceania |
| 67770 | Suboxic zone of a hypersaline microbial mat at the littoral zone of Lake 21 | Kiritimati | Kiribati | KIR | Australia and Oceania |
| 67771 | From hypersaline microbial mat | Lake 21, Kiritimati | Kiribati | KIR | Australia and Oceania |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Microbial community | #Microbial mat |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_2339.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_315;96_1264;97_1499;98_1825;99_2339&stattab=map
- Last taxonomy: Salinivirga cyanobacteriivorans subclade
- 16S sequence: KC665951
- Sequence Identity:
- Total samples: 4650
- soil counts: 195
- aquatic counts: 2577
- animal counts: 1830
- plant counts: 48
Safety information
risk assessment
- @ref: 24854
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 24854 | Salinivirga cyanobacteriivorans strain L21-Spi-D4 16S ribosomal RNA gene, partial sequence | KC665951 | 1467 | ena | 1307839 |
| 67770 | Salinivirga cyanobacteriivorans strain L21-Spi-D4 chromosome, complete genome | CP013118 | 4812386 | ena | 1307839 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Salinivirga cyanobacteriivorans L21-Spi-D4 | GCA_001443605 | complete | ncbi | 1307839 |
| 66792 | Salinivirga cyanobacteriivorans strain L21-Spi-D4 | 1307839.5 | complete | patric | 1307839 |
| 66792 | Salinivirga cyanobacteriivorans L21-Spi-D4 | 2773857854 | complete | img | 1307839 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 24854 | 39.0 | sequence analysis |
| 67770 | 39 | genome sequence analysis |
| 67771 | 39.0 | genome sequence analysis |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 95.545 | no |
| gram-positive | no | 98.875 | no |
| anaerobic | yes | 89.703 | no |
| aerobic | no | 93.335 | no |
| halophile | no | 60.361 | no |
| spore-forming | no | 92.841 | no |
| glucose-util | yes | 82.507 | no |
| motile | no | 76.901 | no |
| thermophile | no | 97.018 | no |
| glucose-ferment | no | 75.121 | no |
External links
@ref: 24854
culture collection no.: DSM 27204, JCM 31231, KCTC 15528
straininfo link
- @ref: 91331
- straininfo: 402073
literature
- topic: Phylogeny
- Pubmed-ID: 27943642
- title: Characterization of the first cultured representative of a Bacteroidetes clade specialized on the scavenging of cyanobacteria.
- authors: Ben Hania W, Joseph M, Bunk B, Sproer C, Klenk HP, Fardeau ML, Spring S
- journal: Environ Microbiol
- DOI: 10.1111/1462-2920.13639
- year: 2017
- mesh: Animals, Bacteroidetes/classification/genetics/growth & development/*isolation & purification, Base Composition, Cyanobacteria/genetics/metabolism, Fatty Acids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24854 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27204 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27204) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 91331 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402073.1 |