Strain identifier
BacDive ID: 133037
Type strain: 
Species: Pusillimonas sp.
Strain Designation: T7-7
Strain history: <- L. Huang, College of Life Science, Nankai University, China; T7-7
version 8.1 (current version)
General
@ref: 24825
BacDive-ID: 133037
DSM-Number: 18250
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Pusillimonas sp. T7-7 is a mesophilic bacterium that was isolated from mud of seabed from Bohai Sea.
strain history
- @ref: 24825
- history: <- L. Huang, College of Life Science, Nankai University, China; T7-7
doi: 10.13145/bacdive133037.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Pusillimonas
- species: Pusillimonas sp.
- full scientific name: Pusillimonas Stolz et al. 2005
@ref: 24825
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Pusillimonas
species: Pusillimonas sp.
full scientific name: Pusillimonas sp.
strain designation: T7-7
type strain: no
Culture and growth conditions
culture medium
- @ref: 24825
- name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
- growth: yes
- link: https://mediadive.dsmz.de/medium/381
- composition: Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
- @ref: 24825
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24825
- sample type: mud of seabed from Bohai Sea
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Mud (Sludge) |
taxonmaps
- @ref: 69479
- File name: preview.99_4686.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_2229;97_2828;98_3512;99_4686&stattab=map
- Last taxonomy: Pusillimonas
- 16S sequence: DQ417606
- Sequence Identity:
- Total samples: 170
- soil counts: 61
- aquatic counts: 14
- animal counts: 94
- plant counts: 1
Sequence information
16S sequences
- @ref: 24825
- description: Pusillimonas noertemannii strain T7-7 16S ribosomal RNA gene, partial sequence
- accession: DQ417606
- length: 1493
- database: ena
- NCBI tax ID: 305977
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pusillimonas sp. T7-7 | GCA_000209655 | complete | ncbi | 1007105 |
| 66792 | Pusillimonas sp. T7-7 | 1007105.3 | complete | patric | 1007105 |
GC content
- @ref: 24825
- GC-content: 52.24
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 83.06 | no |
| flagellated | yes | 52.549 | no |
| gram-positive | no | 97.502 | no |
| anaerobic | no | 98.45 | no |
| aerobic | yes | 86.471 | no |
| halophile | no | 76.864 | no |
| spore-forming | no | 95.573 | no |
| glucose-util | no | 78.088 | no |
| thermophile | no | 99.083 | no |
| glucose-ferment | no | 89.577 | no |
External links
@ref: 24825
culture collection no.: DSM 18250
straininfo link
- @ref: 91305
- straininfo: 403517
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Genetics | 21622753 | Complete genome sequence of Pusillimonas sp. T7-7, a cold-tolerant diesel oil-degrading bacterium isolated from the Bohai Sea in China. | Cao B, Ma T, Ren Y, Ren Y, Li G, Li P, Guo X, Ding P, Feng L | J Bacteriol | 10.1128/JB.05242-11 | 2011 | Alcaligenaceae/*genetics/*isolation & purification/metabolism, Base Sequence, Biodegradation, Environmental, China, Gasoline/*microbiology, *Genome, Bacterial, Molecular Sequence Data, Seawater/*microbiology | Enzymology |
| Enzymology | 23417490 | Characterization of a novel Rieske-type alkane monooxygenase system in Pusillimonas sp. strain T7-7. | Li P, Wang L, Feng L | J Bacteriol | 10.1128/JB.02107-12 | 2013 | Alcaligenaceae/chemistry/*enzymology/genetics, Alkanes/chemistry/metabolism, Bacterial Proteins/*chemistry/genetics/metabolism, Cytochrome P-450 CYP4A/*chemistry/genetics/metabolism, Kinetics, Substrate Specificity | Metabolism |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24825 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18250 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18250) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 91305 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403517.1 |