General

@ref: 24819

BacDive-ID: 133031

DSM-Number: 29932

keywords: 16S sequence, Bacteria, mesophilic

description: Deinococcus saudiensis DSM 29932 is a mesophilic bacterium that was isolated from desert soil.

NCBI tax id

• NCBI tax id: 1765963
• Matching level: species

strain history

• @ref: 24819
• history: <- W. Li, YIM; YIM F235 <- F. Hussain

doi: 10.13145/bacdive133031.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/deinococcota
• domain: Bacteria
• phylum: Deinococcota
• class: Deinococci
• order: Deinococcales
• family: Deinococcaceae
• genus: Deinococcus
• species: Deinococcus saudiensis
• full scientific name: Deinococcus saudiensis Hussain et al. 2016

@ref: 24819

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Deinococcales

family: Deinococcaceae

genus: Deinococcus

species: Deinococcus saudiensis

full scientific name: Deinococcus saudiensis Hussain et al. 2016

type strain: no

Culture and growth conditions

culture medium

• @ref: 24819
• name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
• growth: yes
• link: https://mediadive.dsmz.de/medium/65
• composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

• @ref: 24819
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 24819
• sample type: desert soil
• geographic location: Madina province, Yanbu’ al Bahr (24° 05' N 38° 00' E)
• country: Saudi Arabia
• origin.country: SAU
• continent: Asia
• latitude: 24.0833
• longitude: 38

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_1921.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_90;96_228;97_250;98_279;99_1921&stattab=map
• Last taxonomy: Deinococcus
• 16S sequence: KT278763
• Sequence Identity:
• Total samples: 3947
• soil counts: 295
• aquatic counts: 1779
• animal counts: 1502
• plant counts: 371

Safety information

risk assessment

• @ref: 24819
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 24819
• description: Deinococcus sp. YIM F235 16S ribosomal RNA gene, partial sequence
• accession: KT278763
• length: 1529
• database: ena
• NCBI tax ID: 1765961

GC content

• @ref: 24819
• GC-content: 69.0
• method: high performance liquid chromatography (HPLC)

External links

@ref: 24819

culture collection no.: DSM 29932, YIM F235

straininfo link

• @ref: 91301
• straininfo: 408100

literature

• topic: Phylogeny
• Pubmed-ID: 27600000
• title: Deinococcus saudiensis sp. nov., isolated from desert.
• authors: Hussain F, Khan IU, Habib N, Xian WD, Hozzein WN, Zhang ZD, Zhi XY, Li WJ
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijsem.0.001479
• year: 2016
• mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Deinococcus/*classification/genetics/isolation & purification, *Desert Climate, Fatty Acids/chemistry, Gamma Rays, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Saudi Arabia, Sequence Analysis, DNA, *Soil Microbiology, Ultraviolet Rays, Vitamin K 2/analogs & derivatives/chemistry
• topic2: Transcriptome

Reference