Strain identifier
BacDive ID: 132941
Type strain: 
Species: Deinococcus antarcticus
Strain Designation: G3-6-20
Strain history: <- H. Li, Polar Res. Institute of China, Shanghai, PR China; G3-6-20 <- N. Dong
NCBI tax ID(s): 1298767 (species)
version 8.1 (current version)
General
@ref: 24729
BacDive-ID: 132941
DSM-Number: 27864
keywords: 16S sequence, Bacteria, mesophilic
description: Deinococcus antarcticus G3-6-20 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1298767
- Matching level: species
strain history
- @ref: 24729
- history: <- H. Li, Polar Res. Institute of China, Shanghai, PR China; G3-6-20 <- N. Dong
doi: 10.13145/bacdive132941.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Deinococcales
- family: Deinococcaceae
- genus: Deinococcus
- species: Deinococcus antarcticus
- full scientific name: Deinococcus antarcticus Dong et al. 2015
@ref: 24729
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Deinococcales
family: Deinococcaceae
genus: Deinococcus
species: Deinococcus antarcticus
full scientific name: Deinococcus antarcticus Dong et al. 2015
strain designation: G3-6-20
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24729
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 24729
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24729
- sample type: soil
- geographic location: Grove Mountains area (72° 53' 01'' S 75° 1' 01'' E)
- country: Antarctica
- origin.country: ATA
- continent: Australia and Oceania
- latitude: -72.8836
- longitude: 75.0169
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_17462.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_90;96_8955;97_10768;98_13209;99_17462&stattab=map
- Last taxonomy: Deinococcus antarcticus subclade
- 16S sequence: KC494323
- Sequence Identity:
- Total samples: 3175
- soil counts: 120
- aquatic counts: 481
- animal counts: 2436
- plant counts: 138
Safety information
risk assessment
- @ref: 24729
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24729
- description: Deinococcus antarcticus strain G3-6-20 16S ribosomal RNA gene, partial sequence
- accession: KC494323
- length: 1465
- database: ena
- NCBI tax ID: 1298767
GC content
- @ref: 24729
- GC-content: 63.1
- method: high performance liquid chromatography (HPLC)
External links
@ref: 24729
culture collection no.: DSM 27864, CCTCC AB 2013263
straininfo link
- @ref: 91218
- straininfo: 405103
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25351880 | Deinococcus antarcticus sp. nov., isolated from soil. | Dong N, Li HR, Yuan M, Zhang XH, Yu Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.066324-0 | 2014 | Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Deinococcus/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Molecular Sequence Data, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 31038452 | Deinococcus fonticola sp. nov., isolated from a radioactive thermal spring in Hungary. | Makk J, Enyedi NT, Toth E, Anda D, Szabo A, Felfoldi T, Schumann P, Madl-Szonyi J, Borsodi AK | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003383 | 2019 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Deinococcus/*classification/isolation & purification, Fatty Acids/chemistry, *Gamma Rays, Glycolipids/chemistry, Hot Springs/*microbiology, Hungary, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24729 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27864 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27864) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 91218 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405103.1 |