Strain identifier

BacDive ID: 132921

Type strain: Yes

Species: Acinetobacter qingfengensis

Strain Designation: 2BJ1

Strain history: CIP <- 2014, KCTC

NCBI tax ID(s): 1262585 (species)

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General

@ref: 24709

BacDive-ID: 132921

DSM-Number: 104971

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, oval-shaped, plant pathogen

description: Acinetobacter qingfengensis 2BJ1 is a mesophilic, Gram-negative, oval-shaped plant pathogen that was isolated from canker bark of Populus x euramericana.

NCBI tax id

  • NCBI tax id: 1262585
  • Matching level: species

strain history

@refhistory
24709<- KCTC; KCTC 32225 <- C. Piao; 2BJ1
122095CIP <- 2014, KCTC

doi: 10.13145/bacdive132921.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter qingfengensis
  • full scientific name: Acinetobacter qingfengensis Li et al. 2014

@ref: 24709

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter qingfengensis

full scientific name: Acinetobacter qingfengensis Li et al. 2014

strain designation: 2BJ1

type strain: yes

Morphology

cell morphology

  • @ref: 122095
  • gram stain: negative
  • cell shape: oval-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24709CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
122095CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 24709
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
24709---------------+-+---

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentisolation date
24709canker bark of Populus x euramericanaPopulus x euramericanaPuyang City, Henan ProvinceChinaCHNAsia
122095Populus xeuramericana cancer barkQingfeng, Puyang City, Henan ProvinceChinaCHNAsia2011-09-03

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Bark

taxonmaps

  • @ref: 69479
  • File name: preview.99_4842.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_2391;97_2909;98_3625;99_4842&stattab=map
  • Last taxonomy: Acinetobacter qingfengensis subclade
  • 16S sequence: JX982123
  • Sequence Identity:
  • Total samples: 1518
  • soil counts: 86
  • aquatic counts: 974
  • animal counts: 385
  • plant counts: 73

Safety information

risk assessment

@refpathogenicity plantbiosafety levelbiosafety level comment
24709yes1Risk group (German classification)
1220951Risk group (French classification)

Sequence information

16S sequences

  • @ref: 24709
  • description: Acinetobacter qingfengensis strain 2BJ1 16S ribosomal RNA gene, partial sequence
  • accession: JX982123
  • length: 1399
  • database: ena
  • NCBI tax ID: 1262585

GC content

  • @ref: 24709
  • GC-content: 43.9-44.1

External links

@ref: 24709

culture collection no.: DSM 104971, CFCC 10890, KCTC 32225, CIP 110715

straininfo link

  • @ref: 91199
  • straininfo: 400976

literature

  • topic: Phylogeny
  • Pubmed-ID: 24363297
  • title: Acinetobacter qingfengensis sp. nov., isolated from canker bark of Populus x euramericana.
  • authors: Li Y, He W, Wang T, Piao CG, Guo LM, Chang JP, Guo MW, Xie SJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.051995-0
  • year: 2013
  • mesh: Acinetobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Genes, Bacterial, Molecular Sequence Data, *Phylogeny, Plant Bark/*microbiology, Plant Diseases, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24709Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104971Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104971)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91199Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400976.1
122095Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110715Collection of Institut Pasteur (CIP 110715)