Strain identifier

BacDive ID: 132882

Type strain: No

Species: Wohlfahrtiimonas chitiniclastica

Strain Designation: 575028

Strain history: <- P. Schröttner, Institut f. Medizinische Mikrobiologie und Hygiene, TU Dresden, Germany

NCBI tax ID(s): 400946 (species)

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General

@ref: 24670

BacDive-ID: 132882

DSM-Number: 100917

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Wohlfahrtiimonas chitiniclastica 575028 is a mesophilic human pathogen that was isolated from swab, heel, diabetic foot.

NCBI tax id

  • NCBI tax id: 400946
  • Matching level: species

strain history

  • @ref: 24670
  • history: <- P. Schröttner, Institut f. Medizinische Mikrobiologie und Hygiene, TU Dresden, Germany

doi: 10.13145/bacdive132882.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Cardiobacteriales
  • family: Ignatzschineriaceae
  • genus: Wohlfahrtiimonas
  • species: Wohlfahrtiimonas chitiniclastica
  • full scientific name: Wohlfahrtiimonas chitiniclastica Tóth et al. 2008

@ref: 24670

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Gammaproteobacteria, not assigned to family

genus: Wohlfahrtiimonas

species: Wohlfahrtiimonas chitiniclastica

full scientific name: Wohlfahrtiimonas chitiniclastica Tóth et al. 2008

strain designation: 575028

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24670BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
24670COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 24670
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
24670-----------------+---
24670---------------------
24670-----+/------------+--+

Isolation, sampling and environmental information

isolation

  • @ref: 24670
  • sample type: swab, heel, diabetic foot
  • geographic location: Dresden
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Swab
#Host#Human
#Host Body-Site#Limb#Foot

Safety information

risk assessment

  • @ref: 24670
  • pathogenicity human: yes, in single cases
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Wohlfahrtiimonas chitiniclastica DSM 100917GCA_018415865contigncbi400946
66792Wohlfahrtiimonas chitiniclastica strain DSM 100917400946.28wgspatric400946

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.133no
anaerobicno96.258no
halophileno66.435no
spore-formingno97.847no
glucose-utilno81.705no
aerobicyes65.433no
flagellatedno93.806no
thermophileno98.925yes
motileno89.151no
glucose-fermentno87.197yes

External links

@ref: 24670

culture collection no.: DSM 100917

straininfo link

  • @ref: 91164
  • straininfo: 400594

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24670Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100917Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100917)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
91164Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400594.1