Strain identifier
BacDive ID: 132880
Type strain: 
Species: Wohlfahrtiimonas chitiniclastica
Strain Designation: 81198
Strain history: <- P. Schröttner, Institut f. Medizinische Mikrobiologie und Hygiene, TU Dresden, Germany
NCBI tax ID(s): 400946 (species)
General
@ref: 24668
BacDive-ID: 132880
DSM-Number: 100375
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Wohlfahrtiimonas chitiniclastica 81198 is a mesophilic human pathogen that was isolated from wound swab, ulcer lower leg.
NCBI tax id
- NCBI tax id: 400946
- Matching level: species
strain history
- @ref: 24668
- history: <- P. Schröttner, Institut f. Medizinische Mikrobiologie und Hygiene, TU Dresden, Germany
doi: 10.13145/bacdive132880.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Cardiobacteriales
- family: Ignatzschineriaceae
- genus: Wohlfahrtiimonas
- species: Wohlfahrtiimonas chitiniclastica
- full scientific name: Wohlfahrtiimonas chitiniclastica Tóth et al. 2008
@ref: 24668
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Gammaproteobacteria, not assigned to family
genus: Wohlfahrtiimonas
species: Wohlfahrtiimonas chitiniclastica
full scientific name: Wohlfahrtiimonas chitiniclastica Tóth et al. 2008
strain designation: 81198
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 24668 | BHI MEDIUM (DSMZ Medium 215) | yes | https://mediadive.dsmz.de/medium/215 | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water |
| 24668 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 24668
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24668
- sample type: wound swab, ulcer lower leg
- geographic location: Dresden
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Inflammation | |
| #Infection | #Patient | #Swab |
| #Host Body-Site | #Other | #Wound |
| #Host Body-Site | #Limb | #Leg |
Safety information
risk assessment
- @ref: 24668
- pathogenicity human: yes, in single cases
- pathogenicity animal: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Wohlfahrtiimonas chitiniclastica DSM 100375 | GCA_018415905 | contig | ncbi | 400946 |
| 66792 | Wohlfahrtiimonas chitiniclastica strain DSM 100375 | 400946.30 | wgs | patric | 400946 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 98.307 | no |
| anaerobic | no | 94.957 | no |
| halophile | no | 66.734 | no |
| spore-forming | no | 97.703 | no |
| glucose-util | no | 80.52 | no |
| aerobic | yes | 59.853 | no |
| flagellated | no | 94.345 | no |
| thermophile | no | 99.146 | no |
| motile | no | 89.288 | no |
| glucose-ferment | no | 86.347 | no |
External links
@ref: 24668
culture collection no.: DSM 100375
straininfo link
- @ref: 91162
- straininfo: 401430
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24668 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100375 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100375) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 91162 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401430.1 |