Strain identifier

BacDive ID: 132879

Type strain: No

Species: Wohlfahrtiimonas chitiniclastica

Strain Designation: 78876

Strain history: <- P. Schröttner, Institut f. Medizinische Mikrobiologie und Hygiene, TU Dresden, Germany

NCBI tax ID(s): 400946 (species)

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General

@ref: 24667

BacDive-ID: 132879

DSM-Number: 100374

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Wohlfahrtiimonas chitiniclastica 78876 is a mesophilic human pathogen that was isolated from diabetic foot.

NCBI tax id

  • NCBI tax id: 400946
  • Matching level: species

strain history

  • @ref: 24667
  • history: <- P. Schröttner, Institut f. Medizinische Mikrobiologie und Hygiene, TU Dresden, Germany

doi: 10.13145/bacdive132879.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Cardiobacteriales
  • family: Ignatzschineriaceae
  • genus: Wohlfahrtiimonas
  • species: Wohlfahrtiimonas chitiniclastica
  • full scientific name: Wohlfahrtiimonas chitiniclastica Tóth et al. 2008

@ref: 24667

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Gammaproteobacteria, not assigned to family

genus: Wohlfahrtiimonas

species: Wohlfahrtiimonas chitiniclastica

full scientific name: Wohlfahrtiimonas chitiniclastica Tóth et al. 2008

strain designation: 78876

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24667BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
24667COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 24667
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
24667-----------------+--+

Isolation, sampling and environmental information

isolation

  • @ref: 24667
  • sample type: diabetic foot
  • geographic location: Dresden
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection
#Host Body-Site#Limb#Foot

Safety information

risk assessment

  • @ref: 24667
  • pathogenicity human: yes, in single cases
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Wohlfahrtiimonas chitiniclastica DSM 100374GCA_018415925contigncbi400946
66792Wohlfahrtiimonas chitiniclastica strain DSM 100374400946.26wgspatric400946

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.121no
anaerobicno94.678no
halophileno62.068no
spore-formingno97.576no
glucose-utilno81.318yes
aerobicyes58.937no
motileno88.439no
flagellatedno94.449no
thermophileno99.148yes
glucose-fermentno85.619yes

External links

@ref: 24667

culture collection no.: DSM 100374

straininfo link

  • @ref: 91161
  • straininfo: 399641

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24667Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100374Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100374)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
91161Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399641.1