Strain identifier

BacDive ID: 132851

Type strain: Yes

Species: Psychrobacter luti

Strain Designation: NF23, NF11

Strain history: CIP <- 2003, CECT <- J. Guinea <- N. Bozal: strain NF11

NCBI tax ID(s): 198481 (species)

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General

@ref: 24639

BacDive-ID: 132851

DSM-Number: 15869

keywords: 16S sequence, Bacteria, obligate aerobe, psychrophilic, Gram-negative, oval-shaped

description: Psychrobacter luti NF23 is an obligate aerobe, psychrophilic, Gram-negative bacterium that was isolated from glacier mud collected in the Inlet Admiralty Bay.

NCBI tax id

  • NCBI tax id: 198481
  • Matching level: species

strain history

@refhistory
24639<- LMG; LMG 21276 <- J. Guinea, Univ. Barcelona, Spain <- N. Bozal
120711CIP <- 2003, CECT <- J. Guinea <- N. Bozal: strain NF11

doi: 10.13145/bacdive132851.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter luti
  • full scientific name: Psychrobacter luti Bozal et al. 2003

@ref: 24639

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter luti

full scientific name: Psychrobacter luti Bozal et al. 2003

strain designation: NF23, NF11

type strain: yes

Morphology

cell morphology

  • @ref: 120711
  • gram stain: negative
  • cell shape: oval-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24639TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://mediadive.dsmz.de/medium/545Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
36071MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120711CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
24639positivegrowth20psychrophilic
36071positivegrowth25mesophilic
120711positivegrowth5-30
120711nogrowth37mesophilic
120711nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 120711
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
120711NaClpositivegrowth0-8 %
120711NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12071116947citrate+carbon source
1207114853esculin-hydrolysis
12071117632nitrate+reduction
12071116301nitrite-reduction
12071117632nitrate-respiration

antibiotic resistance

  • @ref: 120711
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 120711
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12071115688acetoin-
12071117234glucose-

enzymes

@refvalueactivityec
120711oxidase+
120711beta-galactosidase-3.2.1.23
120711alcohol dehydrogenase-1.1.1.1
120711gelatinase-
120711amylase-
120711DNase-
120711caseinase-3.4.21.50
120711catalase+1.11.1.6
120711tween esterase+
120711gamma-glutamyltransferase+2.3.2.2
120711lecithinase+
120711lipase+
120711lysine decarboxylase-4.1.1.18
120711ornithine decarboxylase-4.1.1.17
120711phenylalanine ammonia-lyase+4.3.1.24
120711protease+
120711tryptophan deaminase+
120711urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120711-+++++--------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
24639glacier mud collected in the Inlet Admiralty BayKing George Island South Shedland Islands AntarcticaAntarcticaATAAustralia and Oceania
120711Environment, MudKing George IslandAntarcticaATAAntarctica1988

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Glacier
#Environmental#Terrestrial#Mud (Sludge)

taxonmaps

  • @ref: 69479
  • File name: preview.99_275.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_234;99_275&stattab=map
  • Last taxonomy: Psychrobacter
  • 16S sequence: AJ430828
  • Sequence Identity:
  • Total samples: 2913
  • soil counts: 306
  • aquatic counts: 1127
  • animal counts: 1430
  • plant counts: 50

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
246391Risk group (German classification)
1207111Risk group (French classification)

Sequence information

16S sequences

  • @ref: 24639
  • description: Psychrobacter luti 16S rRNA gene, strain LMG 21276
  • accession: AJ430828
  • length: 1491
  • database: ena
  • NCBI tax ID: 198481

External links

@ref: 24639

culture collection no.: DSM 15869, LMG 21276, CIP 108124, CECT 5885

straininfo link

  • @ref: 91139
  • straininfo: 86024

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12892132Characterization of several Psychrobacter strains isolated from Antarctic environments and description of Psychrobacter luti sp. nov. and Psychrobacter fozii sp. nov.Bozal N, Montes MJ, Tudela E, Guinea JInt J Syst Evol Microbiol10.1099/ijs.0.02457-02003Antarctic Regions, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Gammaproteobacteria/*classification/genetics/*isolation & purification/metabolism, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny26827927Psychrobacter glaciei sp. nov., isolated from the ice core of an Arctic glacier.Zeng YX, Yu Y, Liu Y, Li HRInt J Syst Evol Microbiol10.1099/ijsem.0.0009392016Arctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Ice Cover/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Psychrobacter/*classification/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Svalbard, Ubiquinone/chemistryGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24639Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-15869Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15869)
36071Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5712
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91139Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID86024.1
120711Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108124Collection of Institut Pasteur (CIP 108124)