Strain identifier

BacDive ID: 132850

Type strain: Yes

Species: Psychrobacter fozii

Strain Designation: NF11, NF23

Strain history: CIP <- 2003, CECT <- J. Guinea <- N. Bozal: strain NF23

NCBI tax ID(s): 198480 (species)

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General

@ref: 24638

BacDive-ID: 132850

DSM-Number: 15870

keywords: 16S sequence, Bacteria, obligate aerobe, psychrophilic, Gram-negative, oval-shaped

description: Psychrobacter fozii NF11 is an obligate aerobe, psychrophilic, Gram-negative bacterium that was isolated from Sediment.

NCBI tax id

  • NCBI tax id: 198480
  • Matching level: species

strain history

@refhistory
24638<- LMG; LMG 21280 <- J. Guinea, Univ. Barcelona, Spain <- N. Bozal
119441CIP <- 2003, CECT <- J. Guinea <- N. Bozal: strain NF23

doi: 10.13145/bacdive132850.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter fozii
  • full scientific name: Psychrobacter fozii Bozal et al. 2003

@ref: 24638

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter fozii

full scientific name: Psychrobacter fozii Bozal et al. 2003

strain designation: NF11, NF23

type strain: yes

Morphology

cell morphology

  • @ref: 119441
  • gram stain: negative
  • cell shape: oval-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24638TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://mediadive.dsmz.de/medium/545Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
37411MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119441CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
24638positivegrowth20psychrophilic
37411positivegrowth25mesophilic
119441positivegrowth5-30
119441nogrowth37mesophilic
119441nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119441
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
119441NaClpositivegrowth4-10 %
119441NaClnogrowth0 %
119441NaClnogrowth2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11944116947citrate-carbon source
1194414853esculin-hydrolysis
11944117632nitrate-reduction
11944116301nitrite-reduction

antibiotic resistance

  • @ref: 119441
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 119441
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11944115688acetoin-
11944117234glucose-

enzymes

@refvalueactivityec
119441oxidase+
119441beta-galactosidase-3.2.1.23
119441alcohol dehydrogenase-1.1.1.1
119441gelatinase-
119441amylase-
119441DNase-
119441caseinase-3.4.21.50
119441catalase+1.11.1.6
119441tween esterase+
119441gamma-glutamyltransferase+2.3.2.2
119441lecithinase-
119441lipase-
119441lysine decarboxylase-4.1.1.18
119441ornithine decarboxylase-4.1.1.17
119441phenylalanine ammonia-lyase-4.3.1.24
119441tryptophan deaminase-
119441urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119441--++-+-----+--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119441------------------------------------------------++----------------------+------++--+----++++-+++--+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
24638SedimentJohnson's Dock Livingston Island South Shedland IslandsAntarcticaATAAustralia and Oceania
119441Environment, SoilLivingston IslandAntarcticaATAAntarctica1988

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_279.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_234;99_279&stattab=map
  • Last taxonomy: Psychrobacter
  • 16S sequence: AJ430827
  • Sequence Identity:
  • Total samples: 7634
  • soil counts: 925
  • aquatic counts: 3187
  • animal counts: 3350
  • plant counts: 172

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
246381Risk group (German classification)
1194411Risk group (French classification)

Sequence information

16S sequences

  • @ref: 24638
  • description: Psychrobacter fozii 16S rRNA gene, strain LMG 21280
  • accession: AJ430827
  • length: 1491
  • database: ena
  • NCBI tax ID: 198480

External links

@ref: 24638

culture collection no.: DSM 15870, LMG 21280, CIP 108125, CECT 5889, AJ 430827

straininfo link

  • @ref: 91138
  • straininfo: 86025

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12892132Characterization of several Psychrobacter strains isolated from Antarctic environments and description of Psychrobacter luti sp. nov. and Psychrobacter fozii sp. nov.Bozal N, Montes MJ, Tudela E, Guinea JInt J Syst Evol Microbiol10.1099/ijs.0.02457-02003Antarctic Regions, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Gammaproteobacteria/*classification/genetics/*isolation & purification/metabolism, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny26362329Psychrobacter fjordensis sp. nov., a psychrotolerant bacterium isolated from an Arctic fjord in Svalbard.Zeng YX, Yu Y, Li HR, Luo WAntonie Van Leeuwenhoek10.1007/s10482-015-0580-62015Arctic Regions, Bacterial Typing Techniques, Cluster Analysis, Cytosol/chemistry, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Estuaries, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Psychrobacter/*classification/genetics/*isolation & purification/physiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Svalbard, TemperatureGenetics
Phylogeny26827927Psychrobacter glaciei sp. nov., isolated from the ice core of an Arctic glacier.Zeng YX, Yu Y, Liu Y, Li HRInt J Syst Evol Microbiol10.1099/ijsem.0.0009392016Arctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Ice Cover/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Psychrobacter/*classification/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Svalbard, Ubiquinone/chemistryGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24638Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-15870Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15870)
37411Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5713
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91138Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID86025.1
119441Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108125Collection of Institut Pasteur (CIP 108125)