Strain identifier
BacDive ID: 132837
Type strain: 
Species: Zymomonas mobilis
Strain Designation: CU 1 Rif 2
Strain history: <- C. Drainas, Univ. Ioannina, Dept. Chemistry, Greece; CU 1 Rif 2
NCBI tax ID(s): 542 (species)
General
@ref: 24625
BacDive-ID: 132837
DSM-Number: 12497
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Zymomonas mobilis CU 1 Rif 2 is a mesophilic, Gram-negative bacterium of the family Zymomonadaceae.
NCBI tax id
- NCBI tax id: 542
- Matching level: species
strain history
- @ref: 24625
- history: <- C. Drainas, Univ. Ioannina, Dept. Chemistry, Greece; CU 1 Rif 2
doi: 10.13145/bacdive132837.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Zymomonadaceae
- genus: Zymomonas
- species: Zymomonas mobilis
- full scientific name: Zymomonas mobilis corrig. (Lindner 1928) Kluyver and van Niel 1936 (Approved Lists 1980)
synonyms
@ref synonym 20215 Zymomonas mobile 20215 Thermobacterium mobile
@ref: 24625
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Zymomonadaceae
genus: Zymomonas
species: Zymomonas mobilis
full scientific name: Zymomonas mobilis (Lindner 1928) Kluyver and van Niel 1936
strain designation: CU 1 Rif 2
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.995
Culture and growth conditions
culture medium
- @ref: 24625
- name: ZYMOMONAS MEDIUM (DSMZ Medium 10)
- growth: yes
- link: https://mediadive.dsmz.de/medium/10
- composition: Name: ZYMOMONAS MEDIUM (DSMZ Medium 10) Composition: Glucose 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Bacto peptone 10.0 g/l Distilled water
culture temp
- @ref: 24625
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.992 |
Safety information
risk assessment
- @ref: 24625
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Zymomonas mobilis strain DSM 12497 | 542.24 | wgs | patric | 542 |
| 66792 | Zymomonas mobilis mobilis DSM 12497 | 2811994957 | draft | img | 542 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 97.089 | no |
| anaerobic | no | 94.237 | no |
| halophile | no | 80.226 | no |
| spore-forming | no | 96.641 | no |
| glucose-util | yes | 78.922 | no |
| thermophile | no | 85.548 | yes |
| flagellated | no | 76.159 | no |
| aerobic | no | 90.583 | no |
| motile | yes | 77.81 | no |
| glucose-ferment | no | 64.405 | no |
External links
@ref: 24625
culture collection no.: DSM 12497
straininfo link
- @ref: 91126
- straininfo: 404339
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24625 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12497 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12497) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 91126 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404339.1 |