Strain identifier
BacDive ID: 132837
Type strain: 
Species: Zymomonas mobilis
Strain Designation: CU 1 Rif 2
Strain history: <- C. Drainas, Univ. Ioannina, Dept. Chemistry, Greece; CU 1 Rif 2
NCBI tax ID(s): 542 (species)
version 9.3 (current version)
General
@ref: 24625
BacDive-ID: 132837
DSM-Number: 12497
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Zymomonas mobilis CU 1 Rif 2 is a mesophilic, Gram-negative bacterium of the family Zymomonadaceae.
NCBI tax id
- NCBI tax id: 542
- Matching level: species
strain history
- @ref: 24625
- history: <- C. Drainas, Univ. Ioannina, Dept. Chemistry, Greece; CU 1 Rif 2
doi: 10.13145/bacdive132837.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Zymomonadaceae
- genus: Zymomonas
- species: Zymomonas mobilis
- full scientific name: Zymomonas mobilis corrig. (Lindner 1928) Kluyver and van Niel 1936 (Approved Lists 1980)
synonyms
@ref synonym 20215 Thermobacterium mobile 20215 Zymomonas mobile
@ref: 24625
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Zymomonadaceae
genus: Zymomonas
species: Zymomonas mobilis
full scientific name: Zymomonas mobilis (Lindner 1928) Kluyver and van Niel 1936
strain designation: CU 1 Rif 2
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 98.6 |
| 125438 | negative | 97.048 |
Culture and growth conditions
culture medium
- @ref: 24625
- name: ZYMOMONAS MEDIUM (DSMZ Medium 10)
- growth: yes
- link: https://mediadive.dsmz.de/medium/10
- composition: Name: ZYMOMONAS MEDIUM (DSMZ Medium 10) Composition: Glucose 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Bacto peptone 10.0 g/l Distilled water
culture temp
- @ref: 24625
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 97.4
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | no | 99.4 |
| 125438 | no | 91.852 |
Safety information
risk assessment
- @ref: 24625
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Zymomonas mobilis strain DSM 12497 | 542.24 | wgs | patric | 542 |
| 66792 | Zymomonas mobilis mobilis DSM 12497 | 2811994957 | draft | img | 542 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.048 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 57.904 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.852 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 73.112 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 93.658 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 61.295 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 50.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 98.6 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 97.4 |
External links
@ref: 24625
culture collection no.: DSM 12497
straininfo link
- @ref: 91126
- straininfo: 404339
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24625 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12497 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12497) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 91126 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404339.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |