Strain identifier

BacDive ID: 132826

Type strain: Yes

Species: Streptomyces jeddahensis

Strain Designation: G25

Strain history: <- A. Röttig, Institut für Molekulare Mikrobiologie und Biotechnologie, Westfälische Wilhelms-Universität Münster, Germany; G25

NCBI tax ID(s): 1716141 (species)

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General

@ref: 24614

BacDive-ID: 132826

DSM-Number: 101878

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, thermophilic, Gram-positive

description: Streptomyces jeddahensis G25 is an aerobe, spore-forming, thermophilic bacterium that was isolated from arid soil.

NCBI tax id

  • NCBI tax id: 1716141
  • Matching level: species

strain history

  • @ref: 24614
  • history: <- A. Röttig, Institut für Molekulare Mikrobiologie und Biotechnologie, Westfälische Wilhelms-Universität Münster, Germany; G25

doi: 10.13145/bacdive132826.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces jeddahensis
  • full scientific name: Streptomyces jeddahensis Röttig et al. 2017

@ref: 24614

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces jeddahensis

full scientific name: Streptomyces jeddahensis Röttig et al. 2017

strain designation: G25

type strain: yes

Morphology

cell morphology

  • @ref: 43274
  • gram stain: positive
  • motility: no

multicellular morphology

  • @ref: 43274
  • forms multicellular complex: yes
  • further description: oleaginous actinomycete, with an extensively branched substrate mycelium and light- to dark-gray spores

multimedia

  • @ref: 24614
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_101878.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24614ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
43274ISP 3yes
43274ISP 2yes
43274ISP 4yes
43274ISP 5yes
43274ISP 7yes
24614GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43274positivemaximum50thermophilic
24614positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 43274
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43274
  • spore description: spores are cylindrical and spore surfaces are smooth
  • type of spore: spore
  • spore formation: yes

halophily

  • @ref: 43274
  • salt: NaCl
  • growth: positive
  • tested relation: resistant
  • concentration: 5 %(w/v)

observation

@refobservation
43274Melanin formation on tyrosine agar
43274Melanin formation on peptone-iron agar

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4327417234glucose+carbon source
4327428260galactose+carbon source
4327428757fructose+carbon source
4327429864mannitol+carbon source
4327426546rhamnose+carbon source
4327422599arabinose+carbon source
4327418222xylose+carbon source
4327417268myo-inositol+carbon source
4327417754glycerol+carbon source
4327417716lactose+carbon source
4327417306maltose+carbon source
4327417057cellobiose+carbon source
4327417992sucrose+carbon source
4327416634raffinose+carbon source
4327428017starch+carbon source
4327462968cellulose-carbon source

antibiotic resistance

@refChEBIgroup IDmetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
432742897127ampicillinyesyes10000 µg/mL
43274339327carbenicillinyesyes10000 µg/mL
432742790apramycinyesyes15000 µg/mL
4327417698chloramphenicolyesyes25000 µg/mL
4327448923erythromycinyesyes15000 µg/mL
4327417833gentamicinyesyes100000 µg/mL
432746104kanamycinyesyes30000 µg/mL
432747507neomycinyesyes20000 µg/mL
4327418208penicillin gyesyes10000 µg/mL
4327417076streptomycinyesyes10000 µg/mL
4327427902tetracyclineyesyes30000 µg/mL
4327429693thiostreptonyesyes20000 µg/mL

enzymes

@refvalueactivityec
43274alkaline phosphatase+3.1.3.1
43274esterase (C 4)+
43274esterase Lipase (C 8)-
43274lipase (C 14)-
43274leucine arylamidase+3.4.11.1
43274valine arylamidase+
43274cystine arylamidase+3.4.11.3
43274trypsin-3.4.21.4
43274chymotrypsin-3.4.4.5
43274acid phosphatase+3.1.3.2
43274naphthol-AS-BI-phosphohydrolase+/-
43274alpha-galactosidase+3.2.1.22
432746-phospho-beta-galactosidase+3.2.1.85
43274beta-glucuronidase-3.2.1.31
43274alpha-glucosidase+3.2.1.20
43274beta-glucosidase+3.2.1.21
43274N-acetyl-beta-glucosaminidase+3.2.1.52
43274alpha-mannosidase-3.2.1.24
43274alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43274C15:0 anteiso17.6
    43274C15:0 iso15.5
    43274C16:015
    43274C16:0 iso14.8
  • type of FA analysis: whole cell analysis
  • incubation medium: Trypticase soy broth
  • incubation temperature: 28
  • software version: Sherlock 6.1
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
24614arid soilbetween Jeddah and Mekka, next to highway 40 near Bahrah (21.378489 N, 39.463930 E)Saudi ArabiaSAUAsia21.378539.4639
43274arid soilregion near the city of Jeddah in Saudi ArabiaSaudi ArabiaSAUAsia2139

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Xerophilic

taxonmaps

  • @ref: 69479
  • File name: preview.99_2496.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_1597;99_2496&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: KT741024
  • Sequence Identity:
  • Total samples: 14
  • soil counts: 8
  • aquatic counts: 1
  • animal counts: 5

Safety information

risk assessment

  • @ref: 24614
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24614
  • description: Streptomyces jeddahensis strain G25 16S ribosomal RNA gene, partial sequence
  • accession: KT741024
  • length: 1529
  • database: ena
  • NCBI tax ID: 1716141

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces jeddahensis G25GCA_001642995contigncbi1716141
66792Streptomyces jeddahensis G252744054525draftimg1716141

GC content

@refGC-contentmethod
4327470.3genome sequence analysis
2461470.3sequence analysis

External links

@ref: 24614

culture collection no.: DSM 101878, LMG 29545, NCCB 100603

straininfo link

  • @ref: 91118
  • straininfo: 405151

literature

  • topic: Phylogeny
  • Pubmed-ID: 28141499
  • title: Streptomyces jeddahensis sp. nov., an oleaginous bacterium isolated from desert soil.
  • authors: Rottig A, Atasayar E, Meier-Kolthoff JP, Sproer C, Schumann P, Schauer J, Steinbuchel A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001839
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Saudi Arabia, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24614Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101878Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101878)
43274Annika Röttig, Ewelina Atasayar, Jan Philipp Meier-Kolthoff, Cathrin Spröer, Peter Schumann, Jennifer Schauer and Alexander SteinbüchelStreptomyces jeddahensis sp. nov., an oleaginous bacterium isolated from desert soil10.1099/ijsem.0.001839IJSEM 67: 1676-1682 201728141499
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91118Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405151.1