Strain identifier
BacDive ID: 132808
Type strain: 
Species: Rhizobium sp.
Strain Designation: Leaf384
Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf384 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
NCBI tax ID(s): 391 (species)
General
@ref: 24597
BacDive-ID: 132808
DSM-Number: 102705
keywords: genome sequence, Bacteria, mesophilic
description: Rhizobium sp. Leaf384 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.
NCBI tax id
- NCBI tax id: 391
- Matching level: species
strain history
- @ref: 24597
- history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf384 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
doi: 10.13145/bacdive132808.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium sp.
- full scientific name: Rhizobium Frank 1889 (Approved Lists 1980)
synonyms
@ref synonym 20215 Heterorhizobium 20215 Paenirhizobium 20215 Alirhizobium 20215 Peteryoungia
@ref: 24597
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium sp.
full scientific name: Rhizobium sp.
strain designation: Leaf384
type strain: no
Culture and growth conditions
culture medium
- @ref: 24597
- name: RHIZOBIUM MEDIUM (DSMZ Medium 98)
- growth: yes
- link: https://mediadive.dsmz.de/medium/98
- composition: Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
culture temp
- @ref: 24597
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24597
- sample type: leaf of Arabidopsis thaliana, wild-type genotype
- host species: Arabidopsis thaliana
- geographic location: Brugg (47.4816806N 8.217547222E)
- country: Switzerland
- origin.country: CHE
- continent: Europe
- latitude: 47.4817
- longitude: 8.2176
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhizobium sp. Leaf384 | GCA_001424065 | scaffold | ncbi | 1736358 |
| 66792 | Rhizobium sp. Leaf384 | 1736358.3 | wgs | patric | 1736358 |
| 66792 | Rhizobium sp. Leaf384 | 2643221934 | draft | img | 1736358 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 80.263 | no |
| gram-positive | no | 98.019 | no |
| anaerobic | no | 98.214 | no |
| aerobic | yes | 93.257 | no |
| halophile | no | 91.204 | no |
| spore-forming | no | 96.155 | no |
| thermophile | no | 97.576 | no |
| glucose-util | yes | 93.696 | no |
| motile | yes | 75.456 | no |
| glucose-ferment | no | 91.624 | no |
External links
@ref: 24597
culture collection no.: DSM 102705
straininfo link
- @ref: 91104
- straininfo: 407114
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24597 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102705 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102705) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 91104 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407114.1 |