Strain identifier
BacDive ID: 132776
Type strain: 
Species: Pedobacter sp.
Strain Designation: PB46
Strain history: <- S. W. Roh, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea; PB46 ("Pedobacter daejeonensis") <- S. W. Roh
NCBI tax ID(s): 1411316 (species)
General
@ref: 24565
BacDive-ID: 132776
DSM-Number: 19485
keywords: 16S sequence, Bacteria
description: Pedobacter sp. PB46 is a bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1411316
- Matching level: species
strain history
- @ref: 24565
- history: <- S. W. Roh, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea; PB46 ("Pedobacter daejeonensis") <- S. W. Roh
doi: 10.13145/bacdive132776.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Pedobacter
- species: Pedobacter sp.
- full scientific name: Pedobacter Steyn et al. 1998
@ref: 24565
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Pedobacter
species: Pedobacter sp.
full scientific name: Pedobacter sp.
strain designation: PB46
type strain: no
Culture and growth conditions
culture medium
- @ref: 24565
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 24565
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 24565
- sample type: soil
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_14225.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_115;96_1456;97_3275;98_4120;99_14225&stattab=map
- Last taxonomy: Pedobacter
- 16S sequence: EF660750
- Sequence Identity:
- Total samples: 7612
- soil counts: 2160
- aquatic counts: 1652
- animal counts: 1898
- plant counts: 1902
Sequence information
16S sequences
- @ref: 24565
- description: Pedobacter sp. PB46 16S ribosomal RNA gene, partial sequence
- accession: EF660750
- length: 1463
- database: nuccore
- NCBI tax ID: 453843
External links
@ref: 24565
culture collection no.: DSM 19485, KCTC 12509
straininfo link
- @ref: 91074
- straininfo: 407646
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24565 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19485 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19485) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 91074 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407646.1 |