Strain identifier

BacDive ID: 132757

Type strain: No

Species: Massilia sp.

Strain Designation: Leaf139

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf139 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 1882437 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24547

BacDive-ID: 132757

DSM-Number: 102620

keywords: genome sequence, Bacteria, mesophilic

description: Massilia sp. Leaf139 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

  • NCBI tax id: 1882437
  • Matching level: species

strain history

  • @ref: 24547
  • history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf139 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive132757.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Massilia
  • species: Massilia sp.
  • full scientific name: Massilia La Scola et al. 2000
  • synonyms

    @refsynonym
    20215Naxibacter
    20215Mokoshia

@ref: 24547

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Massilia

species: Massilia sp.

full scientific name: Massilia sp.

strain designation: Leaf139

type strain: no

Culture and growth conditions

culture medium

  • @ref: 24547
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 24547
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 24547
  • sample type: leaf of Arabidopsis thaliana, wild-type genotype
  • host species: Arabidopsis thaliana
  • geographic location: Brugg (47.4816806N 8.217547222E)
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe
  • latitude: 47.4817
  • longitude: 8.2176

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Massilia sp. Leaf1391736272.3wgspatric1736272
66792Massilia sp. Leaf1392643221809draftimg1736272
66792Massilia sp. Leaf139GCA_001424165contigncbi1736272

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes90.904no
gram-positiveno98.862no
anaerobicno98.337no
aerobicyes91.499no
halophileno91.163no
spore-formingno93.007no
thermophileno98.755yes
glucose-utilyes55.854no
flagellatedyes82.233no
glucose-fermentno89.589no

External links

@ref: 24547

culture collection no.: DSM 102620

straininfo link

  • @ref: 91058
  • straininfo: 405735

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24547Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102620Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102620)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
91058Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405735.1