Strain identifier
BacDive ID: 132757
Type strain:
Species: Massilia sp.
Strain Designation: Leaf139
Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf139 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
NCBI tax ID(s): 1882437 (species)
General
@ref: 24547
BacDive-ID: 132757
DSM-Number: 102620
keywords: genome sequence, Bacteria, mesophilic
description: Massilia sp. Leaf139 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.
NCBI tax id
- NCBI tax id: 1882437
- Matching level: species
strain history
- @ref: 24547
- history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf139 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
doi: 10.13145/bacdive132757.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Oxalobacteraceae
- genus: Massilia
- species: Massilia sp.
- full scientific name: Massilia La Scola et al. 2000
synonyms
@ref synonym 20215 Naxibacter 20215 Mokoshia
@ref: 24547
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Oxalobacteraceae
genus: Massilia
species: Massilia sp.
full scientific name: Massilia sp.
strain designation: Leaf139
type strain: no
Culture and growth conditions
culture medium
- @ref: 24547
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 24547
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24547
- sample type: leaf of Arabidopsis thaliana, wild-type genotype
- host species: Arabidopsis thaliana
- geographic location: Brugg (47.4816806N 8.217547222E)
- country: Switzerland
- origin.country: CHE
- continent: Europe
- latitude: 47.4817
- longitude: 8.2176
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Massilia sp. Leaf139 | 1736272.3 | wgs | patric | 1736272 |
66792 | Massilia sp. Leaf139 | 2643221809 | draft | img | 1736272 |
66792 | Massilia sp. Leaf139 | GCA_001424165 | contig | ncbi | 1736272 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 90.904 | no |
gram-positive | no | 98.862 | no |
anaerobic | no | 98.337 | no |
aerobic | yes | 91.499 | no |
halophile | no | 91.163 | no |
spore-forming | no | 93.007 | no |
thermophile | no | 98.755 | yes |
glucose-util | yes | 55.854 | no |
flagellated | yes | 82.233 | no |
glucose-ferment | no | 89.589 | no |
External links
@ref: 24547
culture collection no.: DSM 102620
straininfo link
- @ref: 91058
- straininfo: 405735
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
24547 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102620 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102620) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
91058 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405735.1 |