Strain identifier
BacDive ID: 132751
Type strain: 
Species: Maribacter sedimenticola
Variant: Isotype of BacDive ID 5604
Strain history: <- S. B. Kim, KRIBB; KMM 3903 <- O. I. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok
NCBI tax ID(s): 228956 (species)
version 8.1 (current version)
General
@ref: 24541
BacDive-ID: 132751
DSM-Number: 16470
keywords: Bacteria, mesophilic
description: Maribacter sedimenticola DSM 16470 is a mesophilic bacterium that was isolated from bottom sediment sample collected in the Gulf of Peter the Great.
NCBI tax id
- NCBI tax id: 228956
- Matching level: species
strain history
- @ref: 24541
- history: <- S. B. Kim, KRIBB; KMM 3903 <- O. I. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok
doi: 10.13145/bacdive132751.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Maribacter
- species: Maribacter sedimenticola
- full scientific name: Maribacter sedimenticola Nedashkovskaya et al. 2004
@ref: 24541
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Maribacter
species: Maribacter sedimenticola
full scientific name: Maribacter sedimenticola Nedashkovskaya et al. 2004
variant: Isotype of BacDive ID 5604
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24541
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 24541
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24541
- sample type: bottom sediment sample collected in the Gulf of Peter the Great
- geographic location: Sea of Japan
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Sediment |
Safety information
risk assessment
- @ref: 24541
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
- @ref: 24541
- GC-content: 37.0
External links
@ref: 24541
culture collection no.: DSM 16470, CCUG 47098, KCTC 12966, KMM 3903
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15280264 | Maribacter gen. nov., a new member of the family Flavobacteriaceae, isolated from marine habitats, containing the species Maribacter sedimenticola sp. nov., Maribacter aquivivus sp. nov., Maribacter orientalis sp. nov. and Maribacter ulvicola sp. nov. | Nedashkovskaya OI, Kim SB, Han SK, Lysenko AM, Rohde M, Rhee MS, Frolova GM, Falsen E, Mikhailov VV, Bae KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.02849-0 | 2004 | Aerobiosis, Catalase/metabolism, DNA, Bacterial/chemistry, DNA, Ribosomal/chemistry, Fatty Acids/analysis, Flavobacteriaceae/*classification/cytology/isolation & purification/physiology, Genes, rRNA, Genotype, Gentian Violet, Molecular Sequence Data, Oxidoreductases/metabolism, Phenazines, Phenotype, Phylogeny, Pigments, Biological/biosynthesis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ulva/*microbiology | Genetics |
| Phylogeny | 25090958 | Maribacter caenipelagi sp. nov., a member of the Flavobacteriaceae isolated from a tidal flat sediment of the Yellow Sea in Korea. | Jung YT, Lee JS, Yoon JH | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0243-z | 2014 | Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Korea, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysis | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24541 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16470 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16470) |