Strain identifier

BacDive ID: 132729

Type strain: No

Species: Enterobacter sp.

Strain Designation: J49

Strain history: <- L. Ludueña; Universidad Nacional de Rio Cuarto, Rio Cuarto, Argentina; J49 <- T. Taurian, National University of Rio Cuarto

NCBI tax ID(s): 42895 (species)

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General

@ref: 24519

BacDive-ID: 132729

DSM-Number: 105031

keywords: genome sequence, Bacteria, Gram-negative

description: Enterobacter sp. J49 is a Gram-negative bacterium that was isolated from peanut nodules .

NCBI tax id

  • NCBI tax id: 42895
  • Matching level: species

strain history

  • @ref: 24519
  • history: <- L. Ludueña; Universidad Nacional de Rio Cuarto, Rio Cuarto, Argentina; J49 <- T. Taurian, National University of Rio Cuarto

doi: 10.13145/bacdive132729.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter sp.
  • full scientific name: Enterobacter Hormaeche and Edwards 1960 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Cloaca

@ref: 24519

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter sp.

full scientific name: Enterobacter sp.

strain designation: J49

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.5

multimedia

  • @ref: 24519
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_105031.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24519LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
24519NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 24519
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
24519++-++----+-+++++++++-

Isolation, sampling and environmental information

isolation

  • @ref: 24519
  • sample type: peanut nodules (inner tissues)
  • geographic location: Rio Cuarto (Latitude: -33.1333, Longitude: -64.35)
  • country: Argentina
  • origin.country: ARG
  • continent: Middle and South America
  • latitude: -33.1333
  • longitude: -64.35

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root nodule

Sequence information

Genome sequences

  • @ref: 66792
  • description: Enterobacter sp. J49
  • accession: GCA_002148625
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1903627

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno99.5no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.126no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no63.592no
69480spore-formingspore-formingAbility to form endo- or exosporesno88.082no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno99.5yes
69480flagellatedmotile2+Ability to perform flagellated movementyes77.62no

External links

@ref: 24519

culture collection no.: DSM 105031

straininfo link

  • @ref: 91033
  • straininfo: 407356

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24519Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105031Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105031)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
91033Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407356.1