Archive BacDiveID:10.13145/bacdive132692.20230509.8.1

Strain identifier

BacDive ID: 132692

Type strain:

Species: Actinomadura alkaliterrae

Strain Designation: D310AT

Strain history: <- H. Ay, Ondokuz Mayis Univ., Dept. of Biology, Kurupelit-Samsun, Turkey; D310AT

NCBI tax ID(s): 1735446 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 24482

BacDive-ID: 132692

DSM-Number: 101185

keywords: 16S sequence, Bacteria, mesophilic

description: Actinomadura alkaliterrae D310AT is a mesophilic bacterium that was isolated from soil.

NCBI tax id

NCBI tax id: 1735446
Matching level: species

strain history

@ref: 24482
history: <- H. Ay, Ondokuz Mayis Univ., Dept. of Biology, Kurupelit-Samsun, Turkey; D310AT

doi: 10.13145/bacdive132692.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Streptosporangiales
family: Thermomonosporaceae
genus: Actinomadura
species: Actinomadura alkaliterrae
full scientific name: Actinomadura alkaliterrae Ay et al. 2017

@ref: 24482

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Thermomonosporaceae

genus: Actinomadura

species: Actinomadura alkaliterrae

full scientific name: Actinomadura alkaliterrae Ay et al. 2017

strain designation: D310AT

type strain: yes

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
24482	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	yes	https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium554.pdf
24482	GPHF-MEDIUM (DSMZ Medium 553)	yes	https://mediadive.dsmz.de/medium/553	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

culture temp

@ref: 24482
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 24482
sample type: soil
geographic location: Konya, Acigol lake (located at 956 m)
country: Turkey
origin.country: TUR
continent: Asia
latitude: 37.0711
longitude: 33.0674

isolation source categories

Cat1: #Environmental
Cat2: #Terrestrial
Cat3: #Soil

Safety information

risk assessment

@ref: 24482
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 24482
description: Actinomadura alkaliterrae strain D310AT 16S ribosomal RNA gene, partial sequence
accession: KT876993
length: 1481
database: ena
NCBI tax ID: 1735446

External links

@ref: 24482

culture collection no.: DSM 101185, KCTC 39657

straininfo link

@ref: 91000
straininfo: 405263

literature

topic: Phylogeny
Pubmed-ID: 28251351
title: Actinomadura alkaliterrae sp. nov., isolated from an alkaline soil.
authors: Ay H, Nouioui I, Del Carmen Montero-Calasanz M, Carro L, Klenk HP, Goodfellow M, Igual JM, Cetin D, Sahin N, Isik K
journal: Antonie Van Leeuwenhoek
DOI: 10.1007/s10482-017-0850-6
year: 2017
mesh: Actinomycetaceae/isolation & purification/*metabolism, Bacterial Typing Techniques, DNA, Bacterial, Diaminopimelic Acid/metabolism, Fatty Acids, Nucleic Acid Hybridization, Phospholipids, *Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Soil, *Soil Microbiology, Turkey
topic2: Metabolism

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
24482	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-101185	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101185)
91000	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID405263.1