Strain identifier
BacDive ID: 132692
Type strain: 
Species: Actinomadura alkaliterrae
Strain Designation: D310AT
Strain history: <- H. Ay, Ondokuz Mayis Univ., Dept. of Biology, Kurupelit-Samsun, Turkey; D310AT
NCBI tax ID(s): 1735446 (species)
General
@ref: 24482
BacDive-ID: 132692
DSM-Number: 101185
keywords: 16S sequence, Bacteria
description: Actinomadura alkaliterrae D310AT is a bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1735446
- Matching level: species
strain history
- @ref: 24482
- history: <- H. Ay, Ondokuz Mayis Univ., Dept. of Biology, Kurupelit-Samsun, Turkey; D310AT
doi: 10.13145/bacdive132692.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinomadura
- species: Actinomadura alkaliterrae
- full scientific name: Actinomadura alkaliterrae Ay et al. 2017
@ref: 24482
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Thermomonosporaceae
genus: Actinomadura
species: Actinomadura alkaliterrae
full scientific name: Actinomadura alkaliterrae Ay et al. 2017
strain designation: D310AT
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 24482 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium554.pdf | |
| 24482 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
culture temp
- @ref: 24482
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 24482
- sample type: soil
- geographic location: Konya, Acigol lake (located at 956 m)
- country: Turkey
- origin.country: TUR
- continent: Asia
- latitude: 37.0711
- longitude: 33.0674
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 24482
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24482
- description: Actinomadura alkaliterrae strain D310AT 16S ribosomal RNA gene, partial sequence
- accession: KT876993
- length: 1481
- database: nuccore
- NCBI tax ID: 1735446
External links
@ref: 24482
culture collection no.: DSM 101185, KCTC 39657
straininfo link
- @ref: 91000
- straininfo: 405263
literature
- topic: Phylogeny
- Pubmed-ID: 28251351
- title: Actinomadura alkaliterrae sp. nov., isolated from an alkaline soil.
- authors: Ay H, Nouioui I, Del Carmen Montero-Calasanz M, Carro L, Klenk HP, Goodfellow M, Igual JM, Cetin D, Sahin N, Isik K
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-017-0850-6
- year: 2017
- mesh: Actinomycetaceae/isolation & purification/*metabolism, Bacterial Typing Techniques, DNA, Bacterial, Diaminopimelic Acid/metabolism, Fatty Acids, Nucleic Acid Hybridization, Phospholipids, *Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Soil, *Soil Microbiology, Turkey
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24482 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101185 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101185) | |
| 91000 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405263.1 |