Strain identifier
BacDive ID: 132656
Type strain: 
Species: Breznakia pachnodae
Strain Designation: Pei061
Strain history: A. Brune; Max Planck Inst. for Terrestrial Microbiol., Germany; Pei061.
NCBI tax ID(s): 265178 (species)
version 8.1 (current version)
General
@ref: 24445
BacDive-ID: 132656
DSM-Number: 16784
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Breznakia pachnodae Pei061 is a mesophilic bacterium that was isolated from insect gut; Pachnoda ephippiata larva.
NCBI tax id
- NCBI tax id: 265178
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24445 | <- A. Brune <- O. Geissinger, Max-Planck Inst. for Terrestrial Microbiology, Marburg; Pei061 |
| 67770 | A. Brune; Max Planck Inst. for Terrestrial Microbiol., Germany; Pei061. |
doi: 10.13145/bacdive132656.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Erysipelotrichia
- order: Erysipelotrichales
- family: Erysipelotrichaceae
- genus: Breznakia
- species: Breznakia pachnodae
- full scientific name: Breznakia pachnodae Tegtmeier et al. 2016
@ref: 24445
domain: Bacteria
phylum: Firmicutes
class: Erysipelotrichia
order: Erysipelotrichales
family: Erysipelotrichaceae
genus: Breznakia
species: Breznakia pachnodae
full scientific name: Breznakia pachnodae Tegtmeier et al. 2016
strain designation: Pei061
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 24445 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | yes | https://mediadive.dsmz.de/medium/104 | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
| 24445 | FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) | yes | https://mediadive.dsmz.de/medium/1203a | Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 24445 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 24445 | insect gut; Pachnoda ephippiata larva | Pachnoda ephippiata | University of Konstanz | Germany | DEU | Europe |
| 67770 | Intestinal tract of scarab beetle larva (Pachnoda ephippiata) | Pachnoda ephippiata |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Arthropoda | #Insecta |
| #Host Body-Site | #Gastrointestinal tract |
taxonmaps
- @ref: 69479
- File name: preview.99_69058.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_670;96_8103;97_9749;98_48570;99_69058&stattab=map
- Last taxonomy: Breznakia pachnodae subclade
- 16S sequence: AJ629069
- Sequence Identity:
- Total samples: 873
- soil counts: 65
- aquatic counts: 113
- animal counts: 670
- plant counts: 25
Safety information
risk assessment
- @ref: 24445
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24445
- description: Eubacterium sp. Pei061 16S rRNA gene, isolate Pei061
- accession: AJ629069
- length: 1499
- database: ena
- NCBI tax ID: 265178
Genome sequences
- @ref: 66792
- description: Breznakia pachnodae DSM 16784
- accession: 2926608823
- assembly level: draft
- database: img
- NCBI tax ID: 265178
External links
@ref: 24445
culture collection no.: DSM 16784, JCM 30191
straininfo link
- @ref: 90969
- straininfo: 405904
literature
- topic: Phylogeny
- Pubmed-ID: 27270136
- title: Breznakia blatticola gen. nov. sp. nov. and Breznakia pachnodae sp. nov., two fermenting bacteria isolated from insect guts, and emended description of the family Erysipelotrichaceae.
- authors: Tegtmeier D, Riese C, Geissinger O, Radek R, Brune A
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2016.05.003
- year: 2016
- mesh: Animals, Bacterial Typing Techniques, Base Composition/genetics, Base Sequence, Coleoptera/*microbiology, DNA, Bacterial/genetics, Fatty Acids/metabolism, Fermentation/*physiology, *Firmicutes/classification/genetics/isolation & purification, Gastrointestinal Microbiome/*genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24445 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16784 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16784) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 90969 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405904.1 |