Archive BacDiveID:10.13145/bacdive132555.20230509.8.1

Strain identifier

BacDive ID: 132555

Type strain:

Species: Actinomyces polynesiensis

Strain Designation: MS2

Strain history: <- S. Metidji, Timone Hospital, Marseille, France; MS2

NCBI tax ID(s): 1325934 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 24344

BacDive-ID: 132555

DSM-Number: 27066

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Actinomyces polynesiensis MS2 is a mesophilic bacterium that was isolated from human feces of a healthy individual.

NCBI tax id

NCBI tax id: 1325934
Matching level: species

strain history

@ref: 24344
history: <- S. Metidji, Timone Hospital, Marseille, France; MS2

doi: 10.13145/bacdive132555.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Actinomycetales
family: Actinomycetaceae
genus: Actinomyces
species: Actinomyces polynesiensis
full scientific name: Actinomyces polynesiensis Cimmino et al. 2016

@ref: 24344

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Actinomyces

species: Actinomyces polynesiensis

full scientific name: Actinomyces polynesiensis Cimmino et al. 2016

strain designation: MS2

type strain: no

Culture and growth conditions

culture medium

@ref: 24344
name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
growth: yes
link: https://mediadive.dsmz.de/medium/693
composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@ref: 24344
growth: positive
type: growth
temperature: 37
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 24344
sample type: human feces of a healthy individual
geographic location: Raiatea Island
country: French Polynesia
origin.country: PYF
continent: Australia and Oceania

isolation source categories

Cat1	Cat2	Cat3
#Host	#Human
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

taxonmaps

@ref: 69479
File name: preview.99_2357.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_224;96_1272;97_1509;98_1837;99_2357&stattab=map
Last taxonomy: Actinomyces
16S sequence: HF952919
Sequence Identity:
Total samples: 4346
soil counts: 53
aquatic counts: 185
animal counts: 4084
plant counts: 24

Sequence information

16S sequences

@ref: 24344
description: Actinomyces sp. MS2 partial 16S rRNA gene, isolate MS2
accession: HF952919
length: 1517
database: ena
NCBI tax ID: 1325934

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Actinomyces polynesiensis MS2	GCA_000820725	contig	ncbi	1325934
66792	Actinomyces polynesiensis MS2	2627853889	draft	img	1325934

GC content

@ref: 24344
GC-content: 70.80
method: sequence analysis

External links

@ref: 24344

culture collection no.: DSM 27066, CSUR P658

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
24344	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-27066	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27066)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/