Strain identifier
BacDive ID: 132498
Type strain: 
Species: Drancourtella massiliensis
Strain Designation: GD1
Strain history: <- S. Khelaifia, Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille; GD1 <- URMITE
NCBI tax ID(s): 1632013 (species)
General
@ref: 24287
BacDive-ID: 132498
DSM-Number: 100357
keywords: 16S sequence, Bacteria
description: Drancourtella massiliensis GD1 is a bacterium that was isolated from human stool specimen, healthy 28-year-old french man.
NCBI tax id
- NCBI tax id: 1632013
- Matching level: species
strain history
- @ref: 24287
- history: <- S. Khelaifia, Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille; GD1 <- URMITE
doi: 10.13145/bacdive132498.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Drancourtella
- species: Drancourtella massiliensis
- full scientific name: Drancourtella massiliensis Durand et al. 2023
@ref: 24287
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Oscillospiraceae
genus: Drancourtella
species: Drancourtella massiliensis
full scientific name: Drancourtella massiliensis Durand et al. 2016
strain designation: GD1
type strain: no
Culture and growth conditions
culture medium
- @ref: 24287
- name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104
- composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
culture temp
- @ref: 24287
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 24287
- sample type: human stool specimen, healthy 28-year-old french man
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | #Specimen |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Human | #Male |
taxonmaps
- @ref: 69479
- File name: preview.99_3108.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_1622;97_1940;98_2386;99_3108&stattab=map
- Last taxonomy: Eubacteriales
- 16S sequence: LN828944
- Sequence Identity:
- Total samples: 13250
- soil counts: 20
- aquatic counts: 76
- animal counts: 13090
- plant counts: 64
Sequence information
16S sequences
- @ref: 24287
- description: Ruminococcaceae bacterium GD1 partial 16S rRNA gene, strain GD1
- accession: LN828944
- length: 1476
- database: nuccore
- NCBI tax ID: 1632013
GC content
- @ref: 24287
- GC-content: 45.24
- method: sequence analysis
External links
@ref: 24287
culture collection no.: DSM 100357, CSUR P1506
straininfo link
- @ref: 90825
- straininfo: 401818
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24287 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100357 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100357) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 90825 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401818.1 |