Strain identifier
BacDive ID: 132489
Type strain: 
Species: Caviibacter abscessus
Strain Designation: 151011837
Strain history: <- T. Eisenberg, Landesbetrieb Hess. Landeslabor, Giessen, Germany; 151011837
NCBI tax ID(s): 1766719 (species)
General
@ref: 24278
BacDive-ID: 132489
DSM-Number: 101950
keywords: genome sequence, Bacteria, mesophilic
description: Caviibacter abscessus 151011837 is a mesophilic bacterium that was isolated from mandibular lymph node abscess in a guinea pig .
NCBI tax id
- NCBI tax id: 1766719
- Matching level: species
strain history
- @ref: 24278
- history: <- T. Eisenberg, Landesbetrieb Hess. Landeslabor, Giessen, Germany; 151011837
doi: 10.13145/bacdive132489.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/fusobacteriota
- domain: Bacteria
- phylum: Fusobacteriota
- class: Fusobacteriia
- order: Fusobacteriales
- family: Leptotrichiaceae
- genus: Caviibacter
- species: Caviibacter abscessus
- full scientific name: Caviibacter abscessus Eisenberg et al. 2016
@ref: 24278
domain: Bacteria
phylum: Fusobacteria
class: Fusobacteriia
order: Fusobacteriales
family: Leptotrichiaceae
genus: Caviibacter
species: Caviibacter abscessus
full scientific name: Caviibacter abscessus Eisenberg et al. 2016
strain designation: 151011837
type strain: no
Culture and growth conditions
culture medium
- @ref: 24278
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535; with strain-specific modifications) Composition: Horse serum 200.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 24278
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24278
- sample type: mandibular lymph node abscess in a guinea pig (Cavia porcellus)
- host species: Cavia porcellus
- geographic location: Stuttgart
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Rodentia (Other) |
| #Host Body-Site | #Organ | #Lymph node |
| #Host Body-Site | #Oral cavity and airways | |
| #Host Body-Site | #Other | #Abscess |
| #Host | #Mammals | #Rodentia (Other) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Caviibacter abscessus 151011837 | GCA_001517865 | contig | ncbi | 1766719 |
| 66792 | Caviibacter abscessus 151011837 | 2788499921 | draft | img | 1766719 |
External links
@ref: 24278
culture collection no.: DSM 101950
straininfo link
- @ref: 90819
- straininfo: 402309
literature
- topic: Phylogeny
- Pubmed-ID: 26813893
- title: Caviibacter abscessus gen. nov., sp. nov., a member of the family Leptotrichiaceae isolated from guinea pigs (Cavia porcellus).
- authors: Eisenberg T, Glaeser SP, Ewers C, Semmler T, Drescher B, Kampfer P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000922
- year: 2016
- mesh: Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fusobacteria/*classification/genetics/isolation & purification, Genes, Bacterial, Germany, Guinea Pigs/*microbiology, Lymph Nodes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24278 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101950 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101950) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90819 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402309.1 |