Strain identifier
BacDive ID: 132469
Type strain: 
Species: Corynebacterium ihumii
Strain Designation: GD7
Strain history: <- J.-C. Lagier, Hopital de la Timone, Marseille; GD7 <- G. Dubourg, Hopital de la Timone, Marseille
NCBI tax ID(s): 1232427 (species)
General
@ref: 24258
BacDive-ID: 132469
DSM-Number: 45751
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Corynebacterium ihumii GD7 is a mesophilic bacterium that was isolated from human feces of 62 year-old French male with respiratory distress.
NCBI tax id
- NCBI tax id: 1232427
- Matching level: species
strain history
- @ref: 24258
- history: <- J.-C. Lagier, Hopital de la Timone, Marseille; GD7 <- G. Dubourg, Hopital de la Timone, Marseille
doi: 10.13145/bacdive132469.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium ihumii
- full scientific name: Corynebacterium ihumii Padmanabhan et al. 2014
@ref: 24258
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium ihumii
full scientific name: Corynebacterium ihumii Padmanabhan et al. 2014
strain designation: GD7
type strain: no
Culture and growth conditions
culture medium
- @ref: 24258
- name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535a
- composition: Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 24258
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24258
- sample type: human feces of 62 year-old French male with respiratory distress
- geographic location: Marseille, Timone Hospital
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Male |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_611.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_386;97_434;98_495;99_611&stattab=map
- Last taxonomy: Corynebacterium
- 16S sequence: JX424769
- Sequence Identity:
- Total samples: 10045
- soil counts: 151
- aquatic counts: 324
- animal counts: 9543
- plant counts: 27
Sequence information
16S sequences
- @ref: 24258
- description: Corynebacterium ihumii strain GD7 16S ribosomal RNA gene, partial sequence
- accession: JX424769
- length: 1456
- database: ena
- NCBI tax ID: 1232427
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Corynebacterium ihumii GD7 | GCA_000403725 | scaffold | ncbi | 1232427 |
| 66792 | Corynebacterium ihumii GD7 | 2600255095 | draft | img | 1232427 |
| 66792 | Corynebacterium ihumii DSM 45751 | GCA_028609825 | complete | ncbi | 1232427 |
GC content
- @ref: 24258
- GC-content: 65.1
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.106 | no |
| flagellated | no | 96.524 | no |
| gram-positive | yes | 95.038 | no |
| anaerobic | no | 99.004 | no |
| aerobic | no | 68.333 | no |
| halophile | yes | 85.098 | no |
| spore-forming | no | 94.319 | no |
| glucose-ferment | no | 62.866 | no |
| thermophile | no | 95.108 | yes |
| glucose-util | yes | 76.173 | no |
External links
@ref: 24258
culture collection no.: DSM 45751
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24258 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45751 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45751) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |