Strain identifier
BacDive ID: 132444
Type strain: 
Species: Streptomyces polygonati
Strain Designation: NEAU-G9
Strain history: <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-G9
NCBI tax ID(s): 1617087 (species)
version 8.1 (current version)
General
@ref: 24233
BacDive-ID: 132444
DSM-Number: 100521
keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive
description: Streptomyces polygonati NEAU-G9 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from root of Polygonatum odoratum.
NCBI tax id
- NCBI tax id: 1617087
- Matching level: species
strain history
- @ref: 24233
- history: <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-G9
doi: 10.13145/bacdive132444.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces polygonati
- full scientific name: Streptomyces polygonati Guo et al. 2016
@ref: 24233
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces polygonati
full scientific name: Streptomyces polygonati Guo et al. 2016
strain designation: NEAU-G9
type strain: yes
Morphology
cell morphology
- @ref: 43757
- gram stain: positive
- motility: no
colony morphology
| @ref | colony color | medium used |
|---|---|---|
| 43757 | Dark yellow | ISP 3 |
| 43757 | Greyish-yellow | ISP 2 |
| 43757 | Pale white | ISP 7 |
multimedia
- @ref: 24233
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_100521.jpg
- caption: Medium 84 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 24233 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf | |
| 43757 | ISP 2 | yes | ||
| 43757 | ISP 3 | yes | ||
| 43757 | ISP 4 | yes | ||
| 43757 | ISP 7 | yes | ||
| 24233 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 43757 | positive | growth | 15-32 | |
| 43757 | positive | optimum | 28 | mesophilic |
| 24233 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 43757 | positive | growth | 5-8 |
| 43757 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 43757
- oxygen tolerance: aerobe
spore formation
- @ref: 43757
- spore description: smooth-surfaced, long chains of elliptical spores (0.56 x 0.78 µm)
- type of spore: spore
- spore formation: yes
halophily
- @ref: 43757
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-2 %(w/v)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43757 | 12936 | D-galactose | - | carbon source |
| 43757 | 17634 | D-glucose | - | carbon source |
| 43757 | 16899 | D-mannitol | - | carbon source |
| 43757 | 16024 | D-mannose | - | carbon source |
| 43757 | 16634 | raffinose | - | carbon source |
| 43757 | 16988 | D-ribose | - | carbon source |
| 43757 | 17924 | D-sorbitol | - | carbon source |
| 43757 | 65327 | D-xylose | - | carbon source |
| 43757 | 17268 | myo-inositol | - | carbon source |
| 43757 | 62345 | L-rhamnose | - | carbon source |
| 43757 | 17716 | lactose | - | carbon source |
| 43757 | 17306 | maltose | - | carbon source |
| 43757 | 62968 | cellulose | - | hydrolysis |
| 43757 | 5291 | gelatin | - | hydrolysis |
| 43757 | 28017 | starch | - | hydrolysis |
| 43757 | 53424 | tween 20 | - | hydrolysis |
| 43757 | 53426 | tween 80 | - | hydrolysis |
| 43757 | 16919 | creatine | - | nitrogen source |
| 43757 | 15428 | glycine | - | nitrogen source |
| 43757 | 29991 | L-aspartate | - | nitrogen source |
| 43757 | 29985 | L-glutamate | - | nitrogen source |
| 43757 | 17115 | L-serine | - | nitrogen source |
| 43757 | 17895 | L-tyrosine | - | nitrogen source |
| 43757 | 17632 | nitrate | - | reduction |
| 43757 | 15824 | D-fructose | + | carbon source |
| 43757 | 30849 | L-arabinose | + | carbon source |
| 43757 | 17992 | sucrose | + | carbon source |
| 43757 | 53423 | tween 40 | + | degradation |
| 43757 | 4853 | esculin | + | hydrolysis |
| 43757 | 16977 | L-alanine | + | nitrogen source |
| 43757 | 16467 | L-arginine | + | nitrogen source |
| 43757 | 17196 | L-asparagine | + | nitrogen source |
| 43757 | 18050 | L-glutamine | + | nitrogen source |
| 43757 | 16857 | L-threonine | + | nitrogen source |
metabolite production
- @ref: 43757
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: no
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 43757 | catalase | + | 1.11.1.6 |
| 43757 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|---|
| 24233 | root of Polygonatum odoratum | Polygonatum odoratum | Heilongjiang province, Harbin (45° 45' N 127° 29' E) | China | CHN | Asia | 45.75 | 127.483 |
| 43757 | The root of Polygonatum odoratum | Harbin, Heilongjiang Province | China | CHN | Asia | 45.75 | 127.483 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Safety information
risk assessment
- @ref: 24233
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24233
- description: Streptomyces polygonati strain NEAU-G9 16S ribosomal RNA gene, partial sequence
- accession: KP208836
- length: 1514
- database: ena
- NCBI tax ID: 1617087
GC content
- @ref: 24233
- GC-content: 76.9
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 24233
culture collection no.: DSM 100521, CGMCC 4.7237
straininfo link
- @ref: 90782
- straininfo: 398245
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26790410 | Streptomyces polygonati sp. nov., an endophytic actinomycete isolated from a root of Polygonatum odoratum (Mill.). | Guo S, Liu C, Liu S, Guan X, Guo L, Jia F, Wang X, Xiang W | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000906 | 2016 | ||
| Phylogeny | 30251113 | Streptomyces polaris sp. nov. and Streptomyces septentrionalis sp. nov., isolated from frozen soil. | Kamjam M, Nopnakorn P, Zhang L, Peng F, Deng Z, Hong K | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1166-x | 2018 | Arctic Regions, Base Composition, Cell Wall/chemistry, Cytosol/chemistry, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiology, Sugars/analysis, Vitamin K 2/analysis | Enzymology |
| Phylogeny | 31639072 | Streptomyces oryziradicis sp. nov., a novel actinomycete isolated from rhizosphere soil of rice (Oryza sativa L.). | Li C, Cao P, Jiang M, Sun T, Shen Y, Xiang W, Zhao J, Wang X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003777 | 2020 | Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Oryza, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24233 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100521 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100521) | |||
| 43757 | Siyu Guo, Chongxi Liu, Shuanghe Liu, Xuejiao Guan, Lifeng Guo, Feiyu Jia, Xiangjing Wang, Wensheng Xiang | Streptomyces polygonati sp. nov., an endophytic actinomycete isolated from a root of Polygonatum odoratum (Mill.) | 10.1099/ijsem.0.000906 | IJSEM 66: 1488-1493 2016 | 26790410 | |
| 90782 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398245.1 |