Strain identifier

BacDive ID: 132441

Type strain: Yes

Species: Streptosporangium saharense

Strain history: <- N. Sabaou, Alger, Algeria; SG20

NCBI tax ID(s): 1706840 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 24230

BacDive-ID: 132441

DSM-Number: 46743

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive

description: Streptosporangium saharense DSM 46743 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from Sahara soil.

NCBI tax id

  • NCBI tax id: 1706840
  • Matching level: species

strain history

  • @ref: 24230
  • history: <- N. Sabaou, Alger, Algeria; SG20

doi: 10.13145/bacdive132441.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Streptosporangium
  • species: Streptosporangium saharense
  • full scientific name: Streptosporangium saharense Chaouch et al. 2016

@ref: 24230

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Streptosporangium

species: Streptosporangium saharense

full scientific name: Streptosporangium saharense Chaouch et al. 2016

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
43759positiveno
69480positive100

multimedia

  • @ref: 24230
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46743.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24230ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
43759ISP 2yes
43759ISP 3yes
43759ISP 4no
43759ISP 6yes
43759ISP 7yes
24230GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43759positivegrowth20-42
43759positiveoptimum25-37mesophilic
24230positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43759positivegrowth3-12alkaliphile
43759positiveoptimum4-10

Physiology and metabolism

oxygen tolerance

  • @ref: 43759
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

halophily

@refsaltgrowthtested relationconcentration
43759NaClpositivegrowth0-1 %(w/v)
43759NaClpositivemaximum1 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4375915963ribitol-assimilation
4375916150benzoate-assimilation
4375917968butyrate-assimilation
4375916947citrate-assimilation
4375915824D-fructose-assimilation
4375916988D-ribose-assimilation
4375917924D-sorbitol-assimilation
4375924996lactate-assimilation
4375917754glycerol-assimilation
4375917716lactose-assimilation
4375917306maltose-assimilation
437596731melezitose-assimilation
4375928053melibiose-assimilation
4375937657methyl D-glucoside-assimilation
4375917268myo-inositol-assimilation
4375930623oxalate-assimilation
4375917272propionate-assimilation
4375916634raffinose-assimilation
4375917814salicin-assimilation
4375930031succinate-assimilation
4375917992sucrose-assimilation
4375930929tartrate-assimilation
4375916708adenine-hydrolysis
4375918305arbutin-hydrolysis
4375962968cellulose-hydrolysis
437594853esculin-hydrolysis
4375916235guanine-hydrolysis
4375917368hypoxanthine-hydrolysis
4375928017starch-hydrolysis
4375915318xanthine-hydrolysis
4375917057cellobiose+assimilation
4375912936D-galactose+assimilation
4375917634D-glucose+assimilation
4375916899D-mannitol+assimilation
4375916024D-mannose+assimilation
4375965327D-xylose+assimilation
4375930849L-arabinose+assimilation
4375962345L-rhamnose+assimilation
4375932954sodium acetate+assimilation
4375950144sodium pyruvate+assimilation
4375927082trehalose+assimilation
43759casein+hydrolysis
437595291gelatin+hydrolysis
4375917895L-tyrosine+hydrolysis
4375953426tween 80+hydrolysis
4375917632nitrate+reduction

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24230Sahara soilGhardaia province, Mzab, Béni-IsguenAlgeriaDZAAfrica
43759Saharan soil sampleBéni-isguen (Mzab), Ghardaia provinceAlgeriaDZAAfrica

isolation source categories

Cat1Cat2Cat3
#Climate#Hot#Arid
#Environmental#Terrestrial#Desert
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_46348.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_1144;97_1343;98_27746;99_46348&stattab=map
  • Last taxonomy: Streptosporangium
  • 16S sequence: KT581983
  • Sequence Identity:
  • Total samples: 52
  • soil counts: 40
  • aquatic counts: 2
  • animal counts: 4
  • plant counts: 6

Safety information

risk assessment

  • @ref: 24230
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24230
  • description: Streptosporangium saharense strain SG20 16S ribosomal RNA gene, partial sequence
  • accession: KT581983
  • length: 1451
  • database: ena
  • NCBI tax ID: 1706840

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptosporangium saharense CECT 8840GCA_014203715scaffoldncbi1706840
66792Streptosporangium saharense strain CECT 88401706840.3wgspatric1706840
66792Streptosporangium saharense CECT 88402863332268draftimg1706840

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.756yes
gram-positiveyes86.733yes
anaerobicno98.562yes
aerobicyes91.475yes
halophileno94.928no
spore-formingyes91.145no
glucose-utilyes89.382yes
thermophileno97.66no
motileno90.387no
glucose-fermentno93.202no

External links

@ref: 24230

culture collection no.: DSM 46743, CECT 8840, SG 20

straininfo link

  • @ref: 90779
  • straininfo: 407506

literature

  • topic: Phylogeny
  • Pubmed-ID: 26755450
  • title: Streptosporangium saharense sp. nov., an actinobacterium isolated from Saharan soil.
  • authors: Chaabane Chaouch F, Bouras N, Mokrane S, Zitouni A, Schumann P, Sproer C, Sabaou N, Klenk HP
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000890
  • year: 2016
  • mesh: Actinobacteria/*classification/genetics/isolation & purification, Africa, Northern, Algeria, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24230Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46743Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46743)
43759Fawzia Chaabane Chaouch, Noureddine Bouras, Salim Mokrane, Abdelghani Zitouni, Peter Schumann, Cathrin Spröer, Nasserdine Sabaou, Hans-Peter KlenkStreptosporangium saharense sp. nov., an actinobacterium isolated from Saharan soil10.1099/ijsem.0.000890IJSEM 66: 1371-1376 201626755450
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
90779Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407506.1