Strain identifier
BacDive ID: 132367
Type strain: 
Species: Metabacillus malikii
Strain history: I. Ahmed; Natl. Agric. Res. Center, Pakistan; NCCP-662.
NCBI tax ID(s): 1504265 (species)
version 8.1 (current version)
General
@ref: 24156
BacDive-ID: 132367
DSM-Number: 29005
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Metabacillus malikii DSM 29005 is a mesophilic bacterium that was isolated from tannery effluent from the treatment pond of a leather factory.
NCBI tax id
- NCBI tax id: 1504265
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24156 | <- I. Ahmed, National Institute for Genomics and Advanced Biotechnology, Pakistan; NCCP-662 <- S. Abbas and I. Ahmed |
| 67770 | I. Ahmed; Natl. Agric. Res. Center, Pakistan; NCCP-662. |
doi: 10.13145/bacdive132367.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Metabacillus
- species: Metabacillus malikii
- full scientific name: Metabacillus malikii (Abbas et al. 2016) Patel and Gupta 2020
synonyms
- @ref: 20215
- synonym: Bacillus malikii
@ref: 24156
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Metabacillus
species: Metabacillus malikii
full scientific name: Metabacillus malikii (Abbas et al. 2016) Patel and Gupta 2020
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24156
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 24156 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7, MK-6, MK-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 24156 | tannery effluent (water and sludge) from the treatment pond of a leather factory | Kasur, Younas Nagar, Leather Pak Tannery (31.10 N 74.45 E) | Pakistan | PAK | Asia | 31.1 | 74.45 |
| 67770 | Tannery effluent sample from the treatment pond of a leather factory | Kasur | Pakistan | PAK | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Plant (Factory) |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Environmental | #Aquatic | #Pond (small) |
Safety information
risk assessment
- @ref: 24156
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24156
- description: Bacillus malikii gene for 16S ribosomal RNA, partial sequence
- accession: AB968093
- length: 1492
- database: ena
- NCBI tax ID: 1504265
Genome sequences
- @ref: 66792
- description: Metabacillus malikii DSM 29005
- accession: 2926541061
- assembly level: draft
- database: img
- NCBI tax ID: 1504265
GC content
- @ref: 24156
- GC-content: 36.9
- method: high performance liquid chromatography (HPLC)
External links
@ref: 24156
culture collection no.: DSM 29005, JCM 30192, LMG 28369, NCCP 662
straininfo link
- @ref: 90713
- straininfo: 400254
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26362330 | A heavy metal tolerant novel bacterium, Bacillus malikii sp. nov., isolated from tannery effluent wastewater. | Abbas S, Ahmed I, Kudo T, Iqbal M, Lee YJ, Fujiwara T, Ohkuma M | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0584-2 | 2015 | Aerobiosis, Bacillus/*classification/drug effects/genetics/*isolation & purification, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Drug Resistance, Bacterial, Fatty Acids/analysis, Glycolipids/analysis, Hydrogen-Ion Concentration, Industrial Waste, Locomotion, Metals, Heavy/*toxicity, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Waste Water/*microbiology | Genetics |
| Phylogeny | 32816657 | Metabacillus sediminilitoris sp. nov., a marine bacterium isolated from a tidal sediment. | Mao H, Wei Y, Gao Y, Pei J, Zhang Y, Fang J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004392 | 2020 | Bacillaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24156 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29005 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29005) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 90713 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400254.1 |