Strain identifier
BacDive ID: 132337
Type strain: 
Species: Calidithermus roseus
Strain history: W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 71039.
NCBI tax ID(s): 1644118 (species)
version 8.1 (current version)
General
@ref: 24126
BacDive-ID: 132337
DSM-Number: 29973
keywords: 16S sequence, Bacteria, thermophilic
description: Calidithermus roseus DSM 29973 is a thermophilic bacterium that was isolated from geothermally heated sediment from a hot spring.
NCBI tax id
- NCBI tax id: 1644118
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24126 | <- W.-J. Li, YIM; YIM 71039 <- Y. Duan |
| 67770 | W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 71039. |
doi: 10.13145/bacdive132337.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Thermales
- family: Thermaceae
- genus: Calidithermus
- species: Calidithermus roseus
- full scientific name: Calidithermus roseus (Ming et al. 2016) Raposo et al. 2019
synonyms
- @ref: 20215
- synonym: Meiothermus roseus
@ref: 24126
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Thermales
family: Thermaceae
genus: Calidithermus
species: Calidithermus roseus
full scientific name: Calidithermus roseus (Ming et al. 2016) Raposo et al. 2019
type strain: no
Culture and growth conditions
culture medium
- @ref: 24126
- name: T 5 MEDIUM (DSMZ Medium 1573)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1573
- composition: Name: T 5 MEDIUM (DSMZ Medium 1573) Composition: Yeast extract 2.0 g/l Peptone 1.0 g/l D(+)-Glucose 1.0 g/l CaCO3 1.0 g/l Tryptone 0.5 g/l MgSO4 x 7 H2O 0.003 g/l Nitrilotriacetic acid 0.0015 g/l NaCl 0.001 g/l MnSO4 x H2O 0.0005 g/l CoSO4 x 7 H2O 0.00018 g/l ZnSO4 x 7 H2O 0.00018 g/l FeSO4 x 7 H2O 0.0001 g/l CaCl2 x 2 H2O 0.0001 g/l NiCl2 x 6 H2O 3e-05 g/l AlK(SO4)2 x 12 H2O 2e-05 g/l H3BO3 1e-05 g/l Na2MoO4 x 2 H2O 1e-05 g/l CuSO4 x 5 H2O 1e-05 g/l Na2WO4 x 2 H2O 4e-07 g/l Na2SeO3 x 5 H2O 3e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 24126 | positive | growth | 50 | thermophilic |
| 67770 | positive | growth | 50 | thermophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 24126 | geothermally heated sediment from a hot spring | Yunnan province, Tengchong county | China | CHN | Asia |
| 67770 | Hot spring in Tengchong county | Yunnan Province | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Sediment |
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_180894.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16211;96_3394;97_4166;98_5327;99_180894&stattab=map
- Last taxonomy: Calidithermus
- 16S sequence: KP232922
- Sequence Identity:
- Total samples: 3
- aquatic counts: 2
- animal counts: 1
Safety information
risk assessment
- @ref: 24126
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24126
- description: Meiothermus sp. YIM 71039 16S ribosomal RNA gene, partial sequence
- accession: KP232922
- length: 1533
- database: ena
- NCBI tax ID: 1644119
GC content
- @ref: 24126
- GC-content: 65.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 24126
culture collection no.: DSM 29973, NBRC 110899, YIM 71039, JCM 30648
straininfo link
- @ref: 90684
- straininfo: 407407
literature
- topic: Phylogeny
- Pubmed-ID: 26219565
- title: Meiothermus roseus sp. nov., a thermophilic bacterium isolated from a geothermal area.
- authors: Ming H, Duan YY, Guo QQ, Yin YR, Zhou EM, Liu L, Li S, Nie GX, Li WJ
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-015-0544-x
- year: 2015
- mesh: Bacteria, Aerobic/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hot Springs/*microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pigments, Biological/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24126 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29973 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29973) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 90684 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407407.1 |