Archive BacDiveID:10.13145/bacdive132307.20230509.8.1

Strain identifier

BacDive ID: 132307

Type strain:

Species: Rathayibacter sp.

Strain Designation: Leaf185

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf185 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 1891630 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 24096

BacDive-ID: 132307

DSM-Number: 102697

keywords: genome sequence, Bacteria, mesophilic

description: Rathayibacter sp. Leaf185 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

NCBI tax id: 1891630
Matching level: species

strain history

@ref: 24096
history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf185 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive132307.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Microbacteriaceae
genus: Rathayibacter
species: Rathayibacter sp.
full scientific name: Rathayibacter Zgurskaya et al. 1993

@ref: 24096

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Rathayibacter

species: Rathayibacter sp.

full scientific name: Rathayibacter sp.

strain designation: Leaf185

type strain: no

Culture and growth conditions

culture medium

@ref: 24096
name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
growth: yes
link: https://mediadive.dsmz.de/medium/92
composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@ref: 24096
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 24096
sample type: leaf of Arabidopsis thaliana, wild-type genotype
host species: Arabidopsis thaliana
geographic location: Hoengg (47.4090306N 8.470169444E)
country: Switzerland
origin.country: CHE
continent: Europe
latitude: 47.409
longitude: 8.4702

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Rathayibacter sp. Leaf185	GCA_001423885	contig	ncbi	1736292
66792	Rathayibacter sp. Leaf185	1736292.3	wgs	patric	1736292
66792	Rathayibacter sp. Leaf185	2643221921	draft	img	1736292

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	no	89.565	no
gram-positive	yes	92.671	no
anaerobic	no	99.376	no
aerobic	yes	93.682	no
halophile	no	88.111	no
spore-forming	no	91.832	no
thermophile	no	99.547	no
glucose-util	yes	85.062	no
flagellated	no	97.842	no
glucose-ferment	no	89.756	no

External links

@ref: 24096

culture collection no.: DSM 102697

straininfo link

@ref: 90654
straininfo: 399645

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
24096	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102697	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102697)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90654	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID399645.1