Archive BacDiveID:10.13145/bacdive132306.20230509.8.1

Strain identifier

BacDive ID: 132306

Type strain:

Species: Rathayibacter sp.

Strain Designation: Leaf248

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf248 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 1891630 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 24095

BacDive-ID: 132306

DSM-Number: 102696

keywords: genome sequence, Bacteria, mesophilic

description: Rathayibacter sp. Leaf248 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

NCBI tax id: 1891630
Matching level: species

strain history

@ref: 24095
history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf248 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive132306.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Microbacteriaceae
genus: Rathayibacter
species: Rathayibacter sp.
full scientific name: Rathayibacter Zgurskaya et al. 1993

@ref: 24095

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Rathayibacter

species: Rathayibacter sp.

full scientific name: Rathayibacter sp.

strain designation: Leaf248

type strain: no

Culture and growth conditions

culture medium

@ref: 24095
name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
growth: yes
link: https://mediadive.dsmz.de/medium/92
composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@ref: 24095
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 24095
sample type: leaf of Arabidopsis thaliana, wild-type genotype
host species: Arabidopsis thaliana
geographic location: Brugg (47.4816806N 8.217547222E)
country: Switzerland
origin.country: CHE
continent: Europe
latitude: 47.4817
longitude: 8.2176

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Rathayibacter sp. Leaf248 Leaf248	GCA_920939495	contig	ncbi	2876555
66792	Rathayibacter sp. Leaf248	2876555.3	wgs	patric	2876555

Genome-based predictions

predictions

trait	prediction	confidence	training_data
gram-positive	yes	94.427	no
anaerobic	no	99.534	no
halophile	no	83.645	no
spore-forming	no	91.969	no
glucose-util	yes	87.917	no
motile	no	91.218	no
flagellated	no	97.66	no
aerobic	yes	93.6	no
thermophile	no	99.487	yes
glucose-ferment	no	90.735	no

External links

@ref: 24095

culture collection no.: DSM 102696

straininfo link

@ref: 90653
straininfo: 407659

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
24095	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102696	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102696)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90653	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID407659.1