Archive BacDiveID:10.13145/bacdive132305.20230509.8.1

Strain identifier

BacDive ID: 132305

Type strain:

Species: Rathayibacter sp.

Strain Designation: Leaf296

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf296 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 1891630 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 24094

BacDive-ID: 132305

DSM-Number: 102695

keywords: genome sequence, Bacteria, mesophilic

description: Rathayibacter sp. Leaf296 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

NCBI tax id: 1891630
Matching level: species

strain history

@ref: 24094
history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf296 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive132305.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Microbacteriaceae
genus: Rathayibacter
species: Rathayibacter sp.
full scientific name: Rathayibacter Zgurskaya et al. 1993

@ref: 24094

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Rathayibacter

species: Rathayibacter sp.

full scientific name: Rathayibacter sp.

strain designation: Leaf296

type strain: no

Culture and growth conditions

culture medium

@ref: 24094
name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
growth: yes
link: https://mediadive.dsmz.de/medium/92
composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@ref: 24094
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 24094
sample type: leaf of Arabidopsis thaliana, wild-type genotype
host species: Arabidopsis thaliana
geographic location: ETH Zurich (47.4074722N 8.50825E)
country: Switzerland
origin.country: CHE
continent: Europe
latitude: 47.4075
longitude: 8.5083

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Rathayibacter sp. Leaf296	GCA_001423045	scaffold	ncbi	1736327
66792	Rathayibacter sp. Leaf296	1736327.3	wgs	patric	1736327
66792	Rathayibacter sp. Leaf296	2643221883	draft	img	1736327

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	no	97.408	no
gram-positive	yes	93.952	no
anaerobic	no	99.487	no
aerobic	yes	93.771	no
halophile	no	84.71	no
spore-forming	no	91.202	no
thermophile	no	99.613	yes
glucose-util	yes	87.164	no
motile	no	92.381	no
glucose-ferment	no	88.171	no

External links

@ref: 24094

culture collection no.: DSM 102695

straininfo link

@ref: 90652
straininfo: 406828

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
24094	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102695	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102695)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90652	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID406828.1