Archive BacDiveID:10.13145/bacdive132300.20230509.8.1

Strain identifier

BacDive ID: 132300

Type strain:

Species: Agromyces sp.

Strain Designation: Root81

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root81 <- Y. Bai

NCBI tax ID(s): 51513 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 24089

BacDive-ID: 132300

DSM-Number: 102276

keywords: genome sequence, Bacteria, mesophilic

description: Agromyces sp. Root81 is a mesophilic bacterium that was isolated from Roots of Arabidopsis thaliana .

NCBI tax id

NCBI tax id: 51513
Matching level: species

strain history

@ref: 24089
history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root81 <- Y. Bai

doi: 10.13145/bacdive132300.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Microbacteriaceae
genus: Agromyces
species: Agromyces sp.
full scientific name: Agromyces Gledhill and Casida 1969 (Approved Lists 1980)

@ref: 24089

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Agromyces

species: Agromyces sp.

full scientific name: Agromyces sp.

strain designation: Root81

type strain: no

Culture and growth conditions

culture medium

@ref: 24089
name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
growth: yes
link: https://mediadive.dsmz.de/medium/92
composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@ref: 24089
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 24089
sample type: Roots of Arabidopsis thaliana (ecotype Shakdara)
host species: Arabidopsis thaliana
geographic location: Cologne (50.958N 6.856E)
country: Germany
origin.country: DEU
continent: Europe
latitude: 50.958
longitude: 6.856

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Agromyces sp. Root81	GCA_001429165	scaffold	ncbi	1736601
66792	Agromyces sp. Root81	1736601.3	wgs	patric	1736601
66792	Agromyces sp. Root81	2643221619	draft	img	1736601

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	no	97.772	no
gram-positive	yes	90.984	no
anaerobic	no	99.626	no
aerobic	yes	91.255	no
halophile	no	92.882	no
spore-forming	no	83.903	no
glucose-util	yes	81.701	no
motile	no	86.666	no
thermophile	no	99.728	yes
glucose-ferment	no	90.495	no

External links

@ref: 24089

culture collection no.: DSM 102276

straininfo link

@ref: 90647
straininfo: 400395

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
24089	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102276	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102276)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90647	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID400395.1