Archive BacDiveID:10.13145/bacdive132296.20230509.8.1

Strain identifier

BacDive ID: 132296

Type strain:

Species: Agreia sp.

Strain Designation: Leaf335

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf335 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 1872416 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 24085

BacDive-ID: 132296

DSM-Number: 102279

keywords: genome sequence, Bacteria, mesophilic

description: Agreia sp. Leaf335 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

NCBI tax id: 1872416
Matching level: species

strain history

@ref: 24085
history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf335 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive132296.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Microbacteriaceae
genus: Agreia
species: Agreia sp.
full scientific name: Agreia Evtushenko et al. 2001

@ref: 24085

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Agreia

species: Agreia sp.

full scientific name: Agreia sp.

strain designation: Leaf335

type strain: no

Culture and growth conditions

culture medium

@ref: 24085
name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
growth: yes
link: https://mediadive.dsmz.de/medium/92
composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@ref: 24085
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 24085
sample type: leaf of Arabidopsis thaliana, wild-type genotype
host species: Arabidopsis thaliana
geographic location: ETH Zurich (47.4074722N 8.50825E)
country: Switzerland
origin.country: CHE
continent: Europe
latitude: 47.4075
longitude: 8.5083

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Agreia sp. Leaf335	GCA_001423605	contig	ncbi	1736340
66792	Agreia sp. Leaf335	1736340.3	wgs	patric	1736340
66792	Agreia sp. Leaf335	2643221902	draft	img	1736340

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	no	90.715	no
gram-positive	yes	93.162	no
anaerobic	no	99.633	no
aerobic	yes	95.098	no
halophile	no	92.348	no
spore-forming	no	92.616	no
thermophile	no	99.748	no
glucose-util	yes	85.083	no
flagellated	no	98.356	no
glucose-ferment	no	91.811	no

External links

@ref: 24085

culture collection no.: DSM 102279

straininfo link

@ref: 90643
straininfo: 406547

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
24085	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102279	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102279)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90643	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID406547.1