Strain identifier

BacDive ID: 132258

Type strain: Yes

Species: Ursidibacter arcticus

Strain Designation: Bamse61

Strain history: <- M.J. Hansen, Fac. Halth and Medical Scs., Univ. Copenhagen, Frederiksberg, Denmark; Bamse61

NCBI tax ID(s): 1524965 (species)

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General

@ref: 24047

BacDive-ID: 132258

DSM-Number: 28138

keywords: 16S sequence, Bacteria, microaerophile, mesophilic

description: Ursidibacter arcticus Bamse61 is a microaerophile, mesophilic bacterium that was isolated from oral cavity of healthy captive brown bear.

NCBI tax id

  • NCBI tax id: 1524965
  • Matching level: species

strain history

  • @ref: 24047
  • history: <- M.J. Hansen, Fac. Halth and Medical Scs., Univ. Copenhagen, Frederiksberg, Denmark; Bamse61

doi: 10.13145/bacdive132258.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Ursidibacter
  • species: Ursidibacter arcticus
  • full scientific name: Ursidibacter arcticus Hansen et al. 2015

@ref: 24047

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Ursidibacter

species: Ursidibacter arcticus

full scientific name: Ursidibacter arcticus Hansen et al. 2015

strain designation: Bamse61

type strain: yes

Morphology

colony morphology

  • @ref: 63203
  • incubation period: 1 day

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24047COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
24047BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
63203positivegrowth37mesophilic
24047positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63203
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836927897tryptophan-energy source
6836917632nitrate+reduction
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6836935581indole-

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
24047+-+/-+---+------------

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
24047--+/---+----+-+------------+------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
24047oral cavity of healthy captive brown bearKolind, Skandinavisk DyreparkDenmarkDNKEurope
63203Oral cavity of a brown bearKolind,Skandinavisk DyreparkDenmarkDNKEurope2011-07-01

isolation source categories

Cat1Cat2
#Host#Mammals
#Host Body-Site#Oral cavity and airways

Sequence information

16S sequences

  • @ref: 24047
  • description: Ursidibacter arcticus strain Bamse61 16S ribosomal RNA gene, partial sequence
  • accession: KJ632969
  • length: 1290
  • database: ena
  • NCBI tax ID: 1524965

External links

@ref: 24047

culture collection no.: DSM 28138, CCUG 65145

straininfo link

  • @ref: 90607
  • straininfo: 402015

literature

  • topic: Phylogeny
  • Pubmed-ID: 26220443
  • title: Ursidibacter maritimus gen. nov., sp. nov. and Ursidibacter arcticus sp. nov., two new members of the family Pasteurellaceae isolated from the oral cavity of bears.
  • authors: Johanne Hansen M, Strom Braaten M, Miki Bojesen A, Christensen H, Sonne C, Dietz R, Frost Bertelsen M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000476
  • year: 2015
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Mouth/*microbiology, Pasteurellaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, Ursidae/*microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24047Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28138Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28138)
63203Curators of the CCUGhttps://www.ccug.se/strain?id=65145Culture Collection University of Gothenburg (CCUG) (CCUG 65145)
68369Automatically annotated from API 20NE
68381Automatically annotated from API rID32STR
90607Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402015.1